Basic Information
Locus ID:
Ag6G02599
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
metal ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 268095296 | 268114927 | + | Ag6G02599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 150,642.31 Da | 45.68 | 67.08 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15565 | PHD2_NSD | 285 | 351 | 1.5414E-12 | - |
| Pfam | PF12047 | Cytosine specific DNA methyltransferase replication foci domain | 13 | 137 | 2.8E-4 | IPR022702 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 215 | 283 | 8.86E-6 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 282 | 1.6E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 395 | 1.4E-8 | IPR013083 |
| SMART | SM00249 | PHD_3 | 353 | 422 | 2.4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 225 | 280 | 2.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 285 | 352 | 2.5 | IPR001965 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1126 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55390.1 | ENHANCED DOWNY MILDEW 2. Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. | 0 |
| RefSeq | XP_017227306.1 | PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Daucus carota subsp. sativus] | 0 |
| F4K3G5 | Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana OX=3702 GN=EDM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161YF21 | Protein ENHANCED DOWNY MILDEW 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001613 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 37.7808 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 30.069815 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.643375 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.298058 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.974854 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 30.93919 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.908318 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.950745 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.557747 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.286385 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 43.849236 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.346817 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 44.140343 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 35.736614 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.790621 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.297794 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.418684 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.798409 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.425298 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.270199 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.957834 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.993992 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.103018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.004992 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.320993 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.984526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.491013 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.927914 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.286968 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.632657 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.80158 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.826705 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.884277 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.881631 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.473593 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.109771 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.802934 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.05198 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.679573 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.393414 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.151532 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 24.239824 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.5767 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.034145 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.490885 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.579851 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.005484 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.670258 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.968176 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.404604 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19094, jg20159 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12176, gene_12179, gene_20628 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah008979, Ah036086, Ah038270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g089610 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14556, Sbi_jg18379, Sbi_jg36777, Sbi_jg46205 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10412, Seu_jg4709, Seu_jg4710 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012699, GOSA_00017399 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl23492, Sgl28621, Sgl78249, Sgl80740, Sgl80744 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010223, gene:ENSEOMG00000015788 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0001840, CQ.Regalona.r1.4BG0025240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30155780 |
| Apiaceae | Apium graveolens | 5 | Ag11G03140, Ag2G00130, Ag2G00131, Ag3G00487, Ag6G02599 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G012410, COCNU_11G010780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702321, gene-LOC103713594, gene-LOC103719059 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.469.V1.1, AsparagusV1_05.2091.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G26604, Ftri16G20018, Ftri16G33854, Ftri2G00241 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G48090.1, AT5G55390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003648m.g.v1.0, Thhalv10012452m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g18510.v2.2, Sp6g17310.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g000310.2N, BniB02g069350.2N, BniB05g035280.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1383 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1548 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g09240 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g08750, gene.Thate09g18950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-9065, nbisL1-mrna-9066 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1954 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030340, Pov_00031940 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G03444, Lb1G03445, Lb1G03450, Lb5G28300, Lb7G35255 |
| Poaceae | Echinochloa crus-galli | 10 | AH03.1418, AH08.1155, AH08.1982, BH03.1551, BH08.1132 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0521300, gene-QOZ80_6BG0473920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0471230.1, HORVU.MOREX.r3.7HG0678920.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004282, gene-QYE76_004283, gene-QYE76_029904 |
| Poaceae | Oryza coarctata | 7 | Oco01G011100, Oco05G003610, Oco09G006280, Oco15G011550 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g32710.1, LOC_Os01g32720.1, LOC_Os08g24880.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G138300, gene-BS78_07G180600, gene-BS78_K295200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404044, Pt_Chr0702700, Pt_Chr0702752 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr10G003090, Chr11G015780, Chr14G006380, Chr16G012830 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G294300, Tel7E01G394600, Tel7E01G429400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG028640, gene_TRIDC5BG030220 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G175300.3, TraesCS5B02G172800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb094550_P001, Zm00001eb199620_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-28761, nbis-gene-28762, nbis-gene-28763 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29695 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.Contig10.6, evm.TU.LG06.813, evm.TU.LG09.1790 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1606 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20351, nbisL1-mrna-20553, nbisL1-mrna-8724 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-410 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15086 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.881, evm.TU.utg000018l.57 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003322, Maker00009225 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22350, nbisL1-mrna-9400 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22669, nbisL1-mrna-4662 |
| Salicaceae | Populus euphratica | 4 | populus_peu05090, populus_peu05091, populus_peu05100 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606556, gene-LOC132628016 |
| Solanaceae | Solanum chilense | 2 | SOLCI003128000, SOLCI005420600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002274, gene-LOC107032693 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16920, gene_2212 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0230, TC06G0426 |
| Zosteraceae | Zostera marina | 1 | Zosma03g14480.v3.1 |