halophFGD

Basic Information

Locus ID: Ag6G02593

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: XLG2

Description: Extra-large guanine nucleotide-binding protein 1-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	267911683	267916571	+	Ag6G02593

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.97	98,650.15 Da	41.22	82.09	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00066	G-alpha	462	849	1.38563E-69	IPR001019
Pfam	PF00503	G-protein alpha subunit	455	837	1.9E-60	IPR001019
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	458	849	7.53E-19	IPR027417
SUPERFAMILY	SSF47895	Transducin (alpha subunit), insertion domain	489	640	9.55E-22	IPR011025
Gene3D	G3DSA:3.40.50.300	-	637	854	2.6E-31	IPR027417
Gene3D	G3DSA:1.10.400.10	-	491	636	2.2E-30	IPR011025
SMART	SM00275	galpha_1	444	830	2.8E-14	IPR001019
ProSiteProfiles	PS51882	G-alpha domain profile.	460	857	52.641075	IPR001019
PRINTS	PR00318	Alpha G protein (transducin) signature	700	728	2.4E-5	IPR001019
PRINTS	PR00318	Alpha G protein (transducin) signature	748	757	2.4E-5	IPR001019
PRINTS	PR00318	Alpha G protein (transducin) signature	463	478	2.4E-5	IPR001019

Gene Ontology

Biological Process:

GO:0007165 (signal transduction) GO:0007186 (G protein-coupled receptor signaling pathway)

Molecular Function:

GO:0003924 (GTPase activity) GO:0019001 (guanyl nucleotide binding) GO:0031683 (G-protein beta/gamma-subunit complex binding)

KEGG Pathway

KO Term:

K04630 (guanine nucleotide-binding protein G(i) subunit alpha)

Pathway:

ko04015 (Rap1 signaling pathway) map04015 (Rap1 signaling pathway) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04024 (cAMP signaling pathway) map04024 (cAMP signaling pathway) ko04062 (Chemokine signaling pathway) map04062 (Chemokine signaling pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04611 (Platelet activation) map04670 (Leukocyte transendothelial migration) ko04916 (Melanogenesis) map04916 (Melanogenesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23460.1	extra-large G-protein 1. encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.
RefSeq	XP_017229822.1	PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Daucus carota subsp. sativus]
Swiss-Prot	O80462	Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=XLG1 PE=1 SV=2
TrEMBL	A0A166GGW3	Extra-large guanine nucleotide-binding protein 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001606 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.242291	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.361128	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.439789	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.278941	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.486836	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.777844	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.809839	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.988222	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	40.108925	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	36.077362	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	27.855942	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.254948	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.802724	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.153138	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	32.223282	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	49.49329	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.894405	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	37.149105	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	32.327049	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	78.454422	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	41.572979	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.882272	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.686805	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.295445	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.111467	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.874299	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.724415	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.444282	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.995003	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.644721		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.83513		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.914855		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	11.714042		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.204973		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	25.340342		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.532652		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.002458		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.734111		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.896451	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.321863	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.498346	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	16.493006	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	72.215462	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.482007	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.358656	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.977488	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.063485	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	21.483444	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.765209	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.012277	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg26233, jg28719, jg28720, jg28724, jg30277, jg40092
Aizoaceae	Mesembryanthemum crystallinum	2	gene_16902, gene_21599
Amaranthaceae	Atriplex hortensis	2	Ah010334, Ah026672
Amaranthaceae	Beta vulgaris	2	BVRB_6g138440, BVRB_9g218240
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12509, Sbi_jg45804, Sbi_jg51541, Sbi_jg5808
Amaranthaceae	Salicornia europaea	2	Seu_jg13561, Seu_jg20166
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013493, GOSA_00022394
Amaranthaceae	Suaeda glauca	5	Sgl00025, Sgl05094, Sgl34187, Sgl39484, Sgl39533
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000492, gene:ENSEOMG00000002698 ... gene:ENSEOMG00000018646, gene:ENSEOMG00000025922, gene:ENSEOMG00000037007, gene:ENSEOMG00000051112
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.6AG0018580, CQ.Regalona.r1.6BG0019680 ... CQ.Regalona.r1.7BG0008380, CQ.Regalona.r1.9AG0016070
Anacardiaceae	Pistacia vera	5	pistato.v30113590, pistato.v30113600, pistato.v30207110 ... pistato.v30286810, pistato.v30286830
Apiaceae	Apium graveolens	5	Ag10G02270, Ag3G00207, Ag6G02593, Ag9G00129, AgUnG00077
Arecaceae	Cocos nucifera	2	COCNU_06G017810, COCNU_14G010180
Arecaceae	Phoenix dactylifera	2	gene-LOC103709166, gene-LOC103723888
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2304.V1.1, AsparagusV1_05.3397.V1.1 ... AsparagusV1_07.3083.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G14598, Ftri17G19545
Brassicaceae	Arabidopsis thaliana	2	AT2G23460.1, AT4G34390.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000039m.g.v1.0, Thhalv10024380m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02460.v2.2, Sp7g32180.v2.2
Brassicaceae	Brassica nigra	4	BniB01g020300.2N, BniB02g086980.2N, BniB03g020630.2N ... BniB05g003920.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq08G1664, Ceq09G0026
Casuarinaceae	Casuarina glauca	2	Cgl08G1704, Cgl09G0031
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g15050, gene.Cymno11g03530
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g05340, gene.Thate06g13380, gene.Thate06g16410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10534, nbisL1-mrna-7068
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2228, evm.TU.LG08.72
Plantaginaceae	Plantago ovata	2	Pov_00029359, Pov_00035537
Plumbaginaceae	Limonium bicolor	4	Lb1G05965, Lb1G05969, Lb3G17191, Lb3G18590
Poaceae	Echinochloa crus-galli	3	AH05.3920, BH05.4000, CH05.4200
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0396300, gene-QOZ80_5BG0444560
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0437540.1
Poaceae	Lolium multiflorum	1	gene-QYE76_000482
Poaceae	Oryza coarctata	2	Oco23G009580, Oco24G009310
Poaceae	Oryza sativa	1	LOC_Os12g40190.1
Poaceae	Paspalum vaginatum	1	gene-BS78_08G127700
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0704170
Poaceae	Sporobolus alterniflorus	4	Chr04G018270, Chr06G018900, Chr19G008290, Chr27G008330
Poaceae	Thinopyrum elongatum	1	Tel5E01G134400
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG009970, gene_TRIDC5BG011620
Poaceae	Triticum aestivum	3	TraesCS5A02G064400.1, TraesCS5B02G068300.2 ... TraesCS5D02G075200.1
Poaceae	Zea mays	1	Zm00001eb030570_P001
Poaceae	Zoysia japonica	1	nbis-gene-30473
Poaceae	Zoysia macrostachya	2	Zma_g25269, Zma_g26058
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.410, evm.TU.LG05.246, evm.TU.LG08.1866 ... evm.TU.LG09.1653, evm.TU.LG25.1067
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g28150, gene.Posoc04g06780, gene.Posoc06g16910
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2148, evm.TU.Scaffold_3_RagTag.307 ... evm.TU.Scaffold_6_RagTag.1939
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17195, nbisL1-mrna-549, nbisL1-mrna-5956
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11255, nbisL1-mrna-14543, nbisL1-mrna-16927 ... nbisL1-mrna-7099
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11853, nbisL1-mrna-3389, nbisL1-mrna-6032
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000011l.1182, evm.TU.utg000016l.178 ... evm.TU.utg000016l.179, evm.TU.utg000019l.1061
Rhizophoraceae	Kandelia obovata	4	Maker00008370, Maker00012723, Maker00016257, Maker00017354
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-15547, nbisL1-mrna-4740, nbisL1-mrna-6464
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14077, nbisL1-mrna-2275, nbisL1-mrna-3159
Salicaceae	Populus euphratica	5	populus_peu08944, populus_peu14269, populus_peu23478 ... populus_peu36415, populus_peu37454
Solanaceae	Lycium barbarum	2	gene-LOC132599116, gene-LOC132623225
Solanaceae	Solanum chilense	2	SOLCI002767500, SOLCI003385200
Solanaceae	Solanum pennellii	2	gene-LOC107010039, gene-LOC107011325
Tamaricaceae	Reaumuria soongarica	2	STRG.11377_chr02_-, gene_3820
Tamaricaceae	Tamarix chinensis	2	TC04G2149, TC10G0537
Zosteraceae	Zostera marina	1	Zosma06g06910.v3.1