Basic Information
Locus ID:
Ag6G02583
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Guanine nucleotide-binding protein subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 266549820 | 266555514 | + | Ag6G02583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 40,980.51 Da | 32.10 | 77.80 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 57 | 369 | 1.16055E-77 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 185 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 323 | 0.0047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 368 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 93 | 5.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 233 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 276 | 4.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 135 | 0.23 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 54 | 368 | 1.56E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 369 | 1.3E-101 | IPR015943 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 233 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 369 | 0.007 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 185 | 6.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 323 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 135 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 8.7E-9 | IPR001680 |
| PIRSF | PIRSF002394 | GNBP_B | 1 | 371 | 5.7E-138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 337 | 368 | 11.210233 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 337 | 377 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 280 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 152 | 194 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 242 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 102 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 152 | 189 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 233 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 61 | 93 | 11.497408 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 172 | 186 | - | IPR019775 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 99 | 114 | 3.3E-28 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 61 | 77 | 3.3E-28 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 80 | 94 | 3.3E-28 | IPR001632 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 172 | 186 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 80 | 94 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 220 | 234 | 2.1E-6 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 117 | 134 | 3.3E-28 | IPR001632 |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04011 (MAPK signaling pathway - yeast)
map04011 (MAPK signaling pathway - yeast)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34460.1 | GTP binding protein beta 1. Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_017230525.1 | PREDICTED: guanine nucleotide-binding protein subunit beta-1 [Daucus carota subsp. sativus] | 0 |
| P93563 | Guanine nucleotide-binding protein subunit beta OS=Solanum tuberosum OX=4113 GN=GB1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161YDD8 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001583 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.769604 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.786028 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.895127 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.342031 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.200322 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.611688 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.750718 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.679703 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 36.537369 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 40.592426 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 46.357624 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.209362 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.937393 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 34.227989 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.277359 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 28.769596 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.775105 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.426065 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.34494 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.46228 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.295952 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.074903 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.678562 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.021362 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.787252 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.503401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.023083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.986715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.314766 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.706774 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.382214 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.547539 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.999164 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.608772 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.503153 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.089353 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.823102 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.301352 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.717075 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.338056 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.295317 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.887137 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.292391 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.308989 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.459853 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.144606 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.042498 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.298588 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.14073 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.523844 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1000, jg28756 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21634, gene_21638 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010250 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12453, Sbi_jg45863 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20220 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022438 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56089, Sgl61422, Sgl61657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020222, gene:ENSEOMG00000036532 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007760, CQ.Regalona.r1.9AG0016760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114200 |
| Apiaceae | Apium graveolens | 2 | Ag6G02583, Ag9G00099 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G019180, COCNU_14G009540, scaffold001875G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702709, gene-LOC103705391 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.682.V1.1, AsparagusV1_07.3155.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri3G01076, Ftri4G27553, Ftri8G00682 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025475m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32260.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g087020.2N, BniB03g020680.2N, BniB04g057040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0090 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0106 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01370, gene.Cymno14g06510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.126 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035807 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10391, Lb2G13465, Lb3G17244 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1407, BH01.1244, CH01.1288 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0222350, gene-QOZ80_3BG0267440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0333760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063185 |
| Poaceae | Oryza coarctata | 2 | Oco05G019840, Oco06G020650 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g46650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104764, Pt_Chr0105153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G008620, Chr04G025640, Chr07G024520, Chr12G028630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G042600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG045230, gene_TRIDC4BG003440 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G294000.1, TraesCS4B02G019900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052290_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20584 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3115, Zma_g788 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1842, evm.TU.LG22.22 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26430, gene.Posoc06g18490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2278, evm.TU.Scaffold_2_RagTag.224 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4983 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14094, nbisL1-mrna-18731 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3282, nbisL1-mrna-9899 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.819, evm.TU.utg000016l.94 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005869, Maker00017326 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14743, nbisL1-mrna-4652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22418 |
| Salicaceae | Populus euphratica | 2 | populus_peu08882, populus_peu36467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599163 |
| Solanaceae | Solanum chilense | 1 | SOLCI000662500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006105 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.18264_chr09_+, gene_7825 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0478, TC12G1042 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02540.v3.1 |