Basic Information
Locus ID:
Ag6G02579
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 266419188 | 266428071 | + | Ag6G02579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 98,021.76 Da | 43.00 | 96.52 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 527 | 799 | 4.5E-23 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 127 | 187 | 3.0E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 499 | 801 | 1.64E-44 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 97 | 360 | 3.23E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 189 | 1.8E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 597 | 820 | 1.5E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 403 | 1.2E-15 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 498 | 596 | 1.1E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 291 | 4.5E-28 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 319 | 342 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 270 | 294 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 173 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 295 | 318 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 174 | 197 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 222 | 246 | 4.2 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 521 | 806 | 23.11405 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 177 | 190 | 2.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 222 | 235 | 2.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 892 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16250.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017248774.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Daucus carota subsp. sativus] | 0 |
| C0LGK4 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana OX=3702 GN=At2g16250 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162B1W1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001579 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.579218 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.970823 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.515414 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.642557 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.161099 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.941921 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.184169 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.860385 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.904654 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.677413 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.004208 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.468411 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.637376 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.867027 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.511136 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.319702 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.049561 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.456861 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.802416 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.3075 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.675951 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.904214 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.531266 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.657661 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.137478 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.610169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.577777 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.745713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.786817 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.131681 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.970184 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.239664 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.209905 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.521322 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.082084 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.600948 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.576359 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.513468 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.845257 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.86398 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.240223 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.997362 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.658819 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.096623 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.059132 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.190708 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.822194 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.318925 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.133936 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.533856 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg11876, jg22876, jg28763, jg30301, jg993 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21655 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010238 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12444, Sbi_jg45873 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20231 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022447 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56078, Sgl61411, Sgl61646 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015508, gene:ENSEOMG00000037295 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007660, CQ.Regalona.r1.9AG0016850 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30046490, pistato.v30114320, pistato.v30290660 |
| Apiaceae | Apium graveolens | 7 | Ag11G03129, Ag11G03888, Ag11G04031, Ag1G00930, Ag6G02579 ... |
| Arecaceae | Cocos nucifera | 4 | COCNU_05G001130, COCNU_06G019210, COCNU_13G004990 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103704246, gene-LOC103705357, gene-LOC103705703 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2369.V1.1, AsparagusV1_03.708.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G18332, Ftri18G15725, Ftri1G05675 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G16250.1, AT4G39270.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023130m.g.v1.0, Thhalv10024435m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g29440.v2.2, Sp7g02900.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g012560.2N, BniB02g089280.2N, BniB03g063530.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G0108, Ceq09G0115 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0125 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g03770, gene.Cymno14g06560 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g28400, gene.Thate06g14220 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.578, evm.TU.LG08.139 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007518, Pov_00007519 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13472, Lb3G17252 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.769, BH01.913, CH01.930 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0218260, gene-QOZ80_3BG0263500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062259 |
| Poaceae | Oryza coarctata | 2 | Oco05G022190, Oco06G023070 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g51440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G098600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107508, Pt_Chr0206794 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G006550, Chr04G027540, Chr07G026460, Chr12G030910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G095300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040530, gene_TRIDC4BG008650 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G259100.1, TraesCS4B02G055600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb055750_P001, Zm00001eb215790_P003 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14904 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g591 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.370, evm.TU.LG08.1849, evm.TU.LG09.1610 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g26650, gene.Posoc04g07480, gene.Posoc06g18550 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.2269, evm.TU.Scaffold_1_RagTag.2270 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4994, nbisL1-mrna-9018 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13900, nbisL1-mrna-14087, nbisL1-mrna-18738 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-15440, nbisL1-mrna-3288, nbisL1-mrna-9910 |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000002l.566, evm.TU.utg000009l.828 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00003388, Maker00006115, Maker00011962, Maker00017023 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-14752, nbisL1-mrna-19087, nbisL1-mrna-3017 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1253, nbisL1-mrna-20271, nbisL1-mrna-22411 |
| Salicaceae | Populus euphratica | 4 | populus_peu08872, populus_peu30735, populus_peu35439 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599173, gene-LOC132604135, gene-LOC132606566 |
| Solanaceae | Solanum chilense | 2 | SOLCI000663400, SOLCI007323300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007220, gene-LOC107008177 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.18269_chr09_-, gene_7830 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0470, TC12G1038 |
| Zosteraceae | Zostera marina | 3 | Zosma03g02650.v3.1, Zosma03g29270.v3.1, Zosma06g02710.v3.1 |