Basic Information
Locus ID:
Ag6G02574
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 265909761 | 265914376 | + | Ag6G02574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 19,303.03 Da | 29.52 | 105.83 | -0.03 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21620.1 | Adenine nucleotide alpha hydrolases-like superfamily protein. Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. | 0 |
| RefSeq | XP_017232006.1 | PREDICTED: uncharacterized protein LOC108206268 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | W9QGS4 | Usp domain-containing protein OS=Morus notabilis OX=981085 GN=L484_018561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.150345 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.337313 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.595394 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.854431 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.253342 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 42.016586 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.336887 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 40.37656 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 110.734413 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 113.064079 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 112.950394 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 80.388855 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 87.910393 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 85.876808 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 82.081429 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 87.194252 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 71.938065 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 138.799408 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 91.263779 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 163.486511 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 198.614609 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 105.215553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 95.890694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 89.051613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 107.395248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 106.524986 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 94.032051 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 99.653503 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 86.754852 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 140.434235 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 115.603203 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 121.25576 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 272.298035 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 165.525574 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 245.132446 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 192.988052 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 172.287384 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 211.249512 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 63.185513 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 107.960129 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 68.367645 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 363.115509 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 297.240173 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 190.530502 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 248.889694 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 424.118622 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 275.163635 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 90.789085 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 80.943016 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 88.433548 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg987 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21660 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010221 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12431, Sbi_jg45908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20247 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022457 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56063, Sgl61396, Sgl61632 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015313, gene:ENSEOMG00000037138 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007490, CQ.Regalona.r1.9AG0016980 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30114430, pistato.v30114510, pistato.v30114830 |
| Apiaceae | Apium graveolens | 4 | Ag1G00932, Ag6G02574, Ag9G00061, AgUnG01117 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010290, scaffold002246G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703730 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2736.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri8G12681, FtriNA30477 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000338m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00780.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0147 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0174 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0384s00012.v1.0, Dusal.0886s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20560 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.148, evm.TU.LG08.149 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007511, Pov_00021946, Pov_00041278 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16700, Lb3G17262 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3148, BH07.2979, CH07.3047 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0142510, gene-QOZ80_2BG0197980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0607560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024643 |
| Poaceae | Oryza coarctata | 2 | Oco03G019310, Oco04G020100 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G247800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203929 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004100, Chr09G022270, Chr15G005510 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG041820, gene_TRIDC6BG048830 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G015000.1.cds1, TraesCS2A02G015300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb252090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8988 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14232 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.359, evm.TU.LG08.1803, evm.TU.LG09.1557 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g23610, gene.Posoc06g01200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.203 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5003 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9910 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9452 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1111 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004881 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14757 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1246 |
| Salicaceae | Populus euphratica | 3 | populus_peu08863, populus_peu08864, populus_peu36491 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599180 |
| Solanaceae | Solanum chilense | 1 | SOLCI007333200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014666 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11445_chr02_+ |