Basic Information
Locus ID:
Ag6G02528
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 260736058 | 260739592 | - | Ag6G02528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 48,383.40 Da | 43.90 | 82.01 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 195 | 225 | 6.4E-6 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 83 | 183 | 3.5E-16 | IPR020683 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 15 | 66 | 1.2E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 375 | 1.39E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 12 | 250 | 2.09E-54 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 84 | 256 | 2.2E-41 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 382 | 1.6E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 83 | 4.7E-16 | IPR036770 |
| SMART | SM00248 | ANK_2a | 45 | 74 | 1.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 157 | 186 | 5.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 10 | 40 | 240.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 112 | 141 | 0.042 | IPR002110 |
| SMART | SM00248 | ANK_2a | 78 | 107 | 5.1E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 194 | 223 | 0.028 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 45 | 77 | 10.630358 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 45 | 77 | 11.99496 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 157 | 182 | 11.426298 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 78 | 110 | 11.38063 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 194 | 226 | 13.27704 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 194 | 225 | 11.903864 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 157 | 189 | 11.59431 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 78 | 105 | 10.524231 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 370 | 9.376395 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 443 | - | - |
| Coils | Coil | Coil | 261 | 288 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28840.1 | XB3 ortholog 1 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_017235064.1 | PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Daucus carota subsp. sativus] | 0 |
| Q94B55 | Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana OX=3702 GN=XBAT31 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161X0F7 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.891642 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.454376 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.924446 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.165506 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.806885 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.388416 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.862566 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.143807 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 76.021004 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 78.959579 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 76.422401 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 74.266602 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 58.872879 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 62.138741 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 94.649414 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 129.061096 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 66.195625 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 130.086166 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 120.44664 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 81.058739 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 85.584671 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 87.256111 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 80.464958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 78.376381 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 102.928528 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 93.007347 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 147.151169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 91.115791 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 86.567184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.679113 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.021467 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.99922 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 51.95388 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 45.872852 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 44.114254 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 37.731869 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 20.255781 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.478804 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.416641 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.087818 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.856829 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 64.300224 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 87.072105 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 102.967926 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 86.143555 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 68.688347 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 103.453827 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 81.081268 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 59.454967 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 76.144447 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16605, jg3383, jg37969, jg8338, jg8339 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5899 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah006327, Ah006516, Ah028046 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g174010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1777, Sbi_jg34753 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2974 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003182 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73008, Sgl76548 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000010478, gene:ENSEOMG00000020952 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0002710, CQ.Regalona.r1.9BG0002960 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30060090, pistato.v30270750 |
| Apiaceae | Apium graveolens | 4 | Ag2G00877, Ag2G02750, Ag6G02522, Ag6G02528 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G001870, COCNU_04G015240, COCNU_12G007710 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103696788, gene-LOC103703462, gene-LOC103716502 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.353.V1.1, AsparagusV1_07.240.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G33912, Ftri11G07776, Ftri12G15801, Ftri9G33156 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11670.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g015000.2N, BniB06g018010.2N, BniB07g020640.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1170, Ceq08G2188 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1199, Cgl08G2347 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g00680, gene.Cymno04g18040 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0011s00012.v1.0, Dusal.0195s00014.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 6 | gene.Thate01g00550, gene.Thate01g33960, gene.Thate03g14870 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1243, evm.TU.LG09.1286 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003339, Pov_00016156 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G09090, Lb2G14659, Lb2G14662, Lb4G23459, Lb7G33176 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4175, AH05.732, BH01.4491, BH05.797, CH02.1531 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107750, gene-QOZ80_2BG0161360 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0005750.1, HORVU.MOREX.r3.3HG0329760.1 ... |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_008788, gene-QYE76_018796, gene-QYE76_018799 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G031170, Oco02G032350, Oco05G009540, Oco06G009890 ... |
| Poaceae | Oryza sativa | 6 | LOC_Os01g39120.1, LOC_Os01g74320.1, LOC_Os03g16780.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G401300, gene-BS78_09G013200 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0102296, Pt_Chr0102323, Pt_Chr0500636, Pt_Chr0601185 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G031040, Chr04G007770, Chr07G003840, Chr12G008600 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G075100, Tel1E01G495300, Tel3E01G900800 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG003820, gene_TRIDC1BG004840 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G034300.2, TraesCS1B02G050200.3 ... |
| Poaceae | Zea mays | 8 | Zm00001eb009020_P001, Zm00001eb012360_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18369, nbis-gene-18370, nbis-gene-18371 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27567, Zma_g3921 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.847, evm.TU.LG24.843 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g37390, gene.Posoc01g39740, gene.Posoc02g01470 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.262, evm.TU.Scaffold_13_RagTag.815 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24541, nbisL1-mrna-30199 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11958, nbisL1-mrna-19662 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16204, nbisL1-mrna-19540 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.487, evm.TU.utg000027l.415 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015379, Maker00018199 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4405, nbisL1-mrna-5571 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11764, nbisL1-mrna-14973 |
| Salicaceae | Populus euphratica | 4 | populus_peu05276, populus_peu22206, populus_peu35660 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605612, gene-LOC132630304, gene-LOC132643556 |
| Solanaceae | Solanum chilense | 3 | SOLCI002799800, SOLCI002978800, SOLCI005672800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004836, gene-LOC107021093, gene-LOC107031803 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2993_chr01_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0514, TC11G2174 |