Basic Information
Locus ID:
Ag6G02518
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
APO protein 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 259604870 | 259609356 | + | Ag6G02518 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 39,105.46 Da | 33.57 | 87.98 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05634 | APO RNA-binding | 203 | 314 | 4.3E-18 | IPR023342 |
| Pfam | PF05634 | APO RNA-binding | 39 | 171 | 1.4E-40 | IPR023342 |
| ProSiteProfiles | PS51499 | APO domain profile. | 91 | 176 | 21.11504 | IPR023342 |
| ProSiteProfiles | PS51499 | APO domain profile. | 233 | 318 | 18.175468 | IPR023342 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21740.1 | Arabidopsis thaliana protein of unknown function (DUF794). ACCUMULATION OF PHOTOSYSTEM ONE 4 | 0 |
| RefSeq | XP_017241942.1 | PREDICTED: APO protein 4, mitochondrial-like [Daucus carota subsp. sativus] | 0 |
| Q9LSZ0 | APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165ZGB7 | APO protein 4, mitochondrial OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008758 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.414007 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.277929 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.935642 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.553803 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.212401 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.391316 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.754384 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.62695 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.541056 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.668238 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.905986 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.495083 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.068389 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.817896 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.955297 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.46592 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.992599 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.010628 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.576869 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.932442 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.107987 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.049425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.424017 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.42872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.994279 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.318832 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.653033 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.082896 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.098441 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.31296 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.818498 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.680875 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.18536 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.782505 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.782525 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.809859 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.19702 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.723131 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.043463 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.281849 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.642204 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.322377 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.751982 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.561729 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.79772 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.066171 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.502421 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.423624 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.33112 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.823642 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10616 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17611 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008882 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028630 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg18299 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4638 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017452 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23448, Sgl28575, Sgl28749 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011518, gene:ENSEOMG00000030671 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0022030, CQ.Regalona.r1.4AG0023380 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30018670, pistato.v30282200 |
| Apiaceae | Apium graveolens | 1 | Ag6G02518 |
| Arecaceae | Cocos nucifera | 1 | contig69275422G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696302 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1465.V1.1, AsparagusV1_08.2060.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G14034 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g041380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2448 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2534 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05910 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g20870, gene.Thate05g25770 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2046, evm.TU.LG05.1620 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026742 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07813, Lb5G28326 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2367, BH09.2572, CH09.2806 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0303110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0198340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046449 |
| Poaceae | Oryza coarctata | 2 | Oco07G016600, Oco08G016020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g53612.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G238400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301042 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004950, Chr23G004980, Chr26G016090, Chr30G002690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G801000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG067090, gene_TRIDC2BG072300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G474900.1, TraesCS2B02G498500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb071730_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.323, evm.TU.LG25.988 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g15880, gene.Posoc05g06350, gene.Posoc10g01970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1493, evm.TU.Scaffold_9_RagTag.1356 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11983, nbisL1-mrna-20437, nbisL1-mrna-20463 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1169 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11002 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.831, evm.TU.utg000006l.856 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009947, Maker00013222 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10385, nbisL1-mrna-1227 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15446, nbisL1-mrna-4732 |
| Salicaceae | Populus euphratica | 1 | populus_peu24075 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627983 |
| Solanaceae | Solanum chilense | 1 | SOLCI003907800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015724 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10475 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0643 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31960.v3.1 |