halophFGD

Basic Information

Locus ID: Ag6G02508

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	259113133	259116291	+	Ag6G02508

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.15	49,615.63 Da	42.41	79.18	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	92	368	8.21157E-93	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	91	365	1.7E-48	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	70	365	9.58E-80	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	170	387	2.2E-62	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	66	169	1.1E-28	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	86	369	40.456467	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	92	118	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	373	400	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G28940.2	Protein kinase superfamily protein.
RefSeq	XP_017231626.1	PREDICTED: probable receptor-like protein kinase At5g47070 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SF86	Serine/threonine-protein kinase PCRK1 OS=Arabidopsis thaliana OX=3702 GN=PCRK1 PE=1 SV=1
TrEMBL	A0A166CYT8	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005346 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.308537	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.402199	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.04552	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.316271	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.888084	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.549162	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.40046	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.077545	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.099424	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.800148	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.209618	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	14.525208	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.184144	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.778062	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.234769	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.691324	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.275215	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.729602	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.272224	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.044586	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.980718	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.719247	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.585672	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.547479	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.846745	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.500466	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.883978	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.372382	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.697603	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.37439		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.135348		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.205914		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.477983		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.501505		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.769192		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.271468		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.087054		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.339001		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.952498	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.221581	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.802495	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	56.537762	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	42.072945	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.690161	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.621332	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	38.185219	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	15.188929	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.671345	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.129887	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.390352	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14976, jg2777, jg32031, jg35761, jg8364
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14267, gene_6992
Amaranthaceae	Atriplex hortensis	2	Ah028024, Ah030384
Amaranthaceae	Beta vulgaris	2	BVRB_7g162090, BVRB_7g173790
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1752, Sbi_jg27107, Sbi_jg33439, Sbi_jg34779
Amaranthaceae	Salicornia europaea	2	Seu_jg2998, Seu_jg8118
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003204, GOSA_00005778
Amaranthaceae	Suaeda glauca	4	Sgl71225, Sgl73034, Sgl74795, Sgl76576
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000010174, gene:ENSEOMG00000010320 ... gene:ENSEOMG00000039652, gene:ENSEOMG00000040733, gene:ENSEOMG00000042162
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.7AG0002900, CQ.Regalona.r1.7AG0016650 ... CQ.Regalona.r1.7BG0017880, CQ.Regalona.r1.9BG0002770, CQ.Regalona.r1.9BG0002790
Anacardiaceae	Pistacia vera	2	pistato.v30170810, pistato.v30273000
Apiaceae	Apium graveolens	4	Ag10G01039, Ag10G01960, Ag2G02931, Ag6G02508
Arecaceae	Cocos nucifera	5	COCNU_07G010540, COCNU_07G010550, COCNU_09G008610 ... COCNU_12G007840, scaffold004486G000060
Arecaceae	Phoenix dactylifera	3	gene-LOC103696856, gene-LOC103698730, gene-LOC103698931
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.694.V1.1, AsparagusV1_04.1776.V1.1 ... AsparagusV1_08.3525.V1.1
Asteraceae	Flaveria trinervia	12	Ftri10G18496, Ftri11G04489, Ftri11G29044, Ftri12G11328 ... Ftri12G25903, Ftri12G26664, Ftri12G33439, Ftri16G28387, Ftri17G08738, Ftri17G20658, Ftri6G31417, FtriNA04448
Brassicaceae	Arabidopsis thaliana	4	AT2G28940.2, AT2G39110.1, AT3G09830.1, AT5G03320.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10013665m.g.v1.0, Thhalv10016674m.g.v1.0 ... Thhalv10017635m.g.v1.0, Thhalv10020792m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g08160.v2.2, Sp4g11750.v2.2, Sp4g21460.v2.2 ... Sp6g39420.v2.2
Brassicaceae	Brassica nigra	7	BniB01g006030.2N, BniB01g055070.2N, BniB02g057070.2N ... BniB05g030720.2N, BniB06g005610.2N, BniB06g018100.2N, BniB07g058030.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0593, Ceq08G1350, Ceq08G2167
Casuarinaceae	Casuarina glauca	3	Cgl02G0607, Cgl08G1380, Cgl08G2321
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g05290, gene.Cymno04g17910, gene.Cymno10g03120 ... gene.Cymno14g01510
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g34100, gene.Thate08g02080, gene.Thate08g22210
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5958
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1466, evm.TU.LG02.1056, evm.TU.LG09.1262
Plantaginaceae	Plantago ovata	3	Pov_00016178, Pov_00032743, Pov_00040302
Plumbaginaceae	Limonium bicolor	3	Lb1G05277, Lb1G07113, Lb4G23123
Poaceae	Echinochloa crus-galli	6	AH01.1959, AH07.3967, BH01.2246, BH07.3781, CH01.2350 ... CH07.3840
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0125880, gene-QOZ80_2AG0150660 ... gene-QOZ80_2BG0181660, gene-QOZ80_2BG0206090
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0038800.1, HORVU.MOREX.r3.2HG0206780.2 ... HORVU.MOREX.r3.6HG0630070.1
Poaceae	Lolium multiflorum	3	gene-QYE76_026542, gene-QYE76_059430, gene-QYE76_070220
Poaceae	Oryza coarctata	4	Oco03G025490, Oco04G025980, Oco19G005000, Oco20G004910
Poaceae	Oryza sativa	2	LOC_Os02g57420.1, LOC_Os10g30600.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G222900, gene-BS78_04G322200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0101474, Pt_Chr0502459, Pt_Chr0502470, Pt_Chr0604433 ... Pt_Chr0604491
Poaceae	Sporobolus alterniflorus	3	Chr06G013760, Chr09G026470, Chr15G000610
Poaceae	Thinopyrum elongatum	3	Tel1E01G261700, Tel2E01G894200, Tel6E01G712800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG021130, gene_TRIDC1BG025630 ... gene_TRIDC2AG073580, gene_TRIDC2BG080270, gene_TRIDC6AG058300, gene_TRIDC6BG068950
Poaceae	Triticum aestivum	9	TraesCS1A02G141300.1, TraesCS1B02G157700.1 ... TraesCS1D02G140300.1, TraesCS2A02G525300.1, TraesCS2B02G555200.1, TraesCS2D02G528200.1, TraesCS6A02G394900.1, TraesCS6B02G434800.1, TraesCS6D02G380200.1
Poaceae	Zea mays	3	Zm00001eb047150_P001, Zm00001eb191260_P001 ... Zm00001eb259080_P002
Poaceae	Zoysia japonica	4	nbis-gene-21303, nbis-gene-39792, nbis-gene-48065 ... nbis-gene-8296
Poaceae	Zoysia macrostachya	3	Zma_g13309, Zma_g14723, Zma_g17431
Portulacaceae	Portulaca oleracea	4	evm.TU.LG16.1138, evm.TU.LG19.870, evm.TU.LG20.1416 ... evm.TU.LG24.866
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g39370, gene.Posoc02g13180, gene.Posoc06g06570
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.504, evm.TU.Scaffold_12_RagTag.245 ... evm.TU.Scaffold_13_RagTag.834, evm.TU.Scaffold_1_RagTag.1541, evm.TU.Scaffold_4_RagTag.1604
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13961, nbisL1-mrna-24556, nbisL1-mrna-5245
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-19145, nbisL1-mrna-21009, nbisL1-mrna-4749 ... nbisL1-mrna-7334
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-19525, nbisL1-mrna-3918, nbisL1-mrna-4424
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000015l.190, add.evm.TU.utg000015l.191 ... evm.TU.utg000008l.878, evm.TU.utg000016l.537, evm.TU.utg000027l.423
Rhizophoraceae	Kandelia obovata	3	Maker00001506, Maker00016497, Maker00017964
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-1034, nbisL1-mrna-2173, nbisL1-mrna-4416 ... nbisL1-mrna-5564, nbisL1-mrna-7709
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11751, nbisL1-mrna-20653, nbisL1-mrna-20946 ... nbisL1-mrna-353, nbisL1-mrna-9566
Salicaceae	Populus euphratica	4	populus_peu06244, populus_peu11673, populus_peu20081 ... populus_peu35673
Solanaceae	Lycium barbarum	3	gene-LOC132605870, gene-LOC132630030, gene-LOC132641670
Solanaceae	Solanum chilense	2	SOLCI001963500, SOLCI002268400
Solanaceae	Solanum pennellii	4	gene-LOC107021473, gene-LOC107027856, gene-LOC107029427 ... gene-LOC107029543
Tamaricaceae	Reaumuria soongarica	2	gene_13294, gene_5609
Tamaricaceae	Tamarix chinensis	3	TC02G1903, TC11G1960, TC11G2128
Zosteraceae	Zostera marina	4	Zosma01g24580.v3.1, Zosma03g11180.v3.1, Zosma05g26180.v3.1 ... Zosma06g29290.v3.1