Basic Information
Locus ID:
Ag6G02492
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ATP synthesis coupled proton transport
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 257502542 | 257505226 | + | Ag6G02492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 28,622.77 Da | 51.80 | 74.54 | -0.54 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25340.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_017236705.1 | PREDICTED: uncharacterized protein LOC108209986 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166GEQ6 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.837078 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.8231 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.609152 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.781883 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.216036 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.772975 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.139118 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.416068 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.292774 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.287682 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.168516 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.649504 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.534502 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.309412 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.385634 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.040191 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.634333 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.035543 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.885976 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.093931 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.631972 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.941395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 45.862 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 49.54702 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.335476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.463778 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.8932 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.639095 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.951284 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.645937 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.690025 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.633841 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.814984 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 97.248001 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.598936 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.807827 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.247639 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.687183 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.810253 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.653414 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.624842 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.527817 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.284459 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.877224 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.68273 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.6098 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.936056 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.722862 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 112.466461 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 108.882118 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18251 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25196 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034074, Ah034736 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21159, Sbi_jg22644 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016274 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62323, Sgl67026 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019443, gene:ENSEOMG00000019602 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021330, CQ.Regalona.r1.2AG0023110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30128450, pistato.v30250180 |
| Apiaceae | Apium graveolens | 2 | Ag11G04420, Ag6G02492 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G011030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718854 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3208.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G10204, Ftri16G30568, Ftri1G20392, Ftri2G33515 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G80060.1, AT4G32270.1, AT5G25340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004912m.g.v1.0, Thhalv10026098m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g22200.v2.2, Sp7g30010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g077910.2N, BniB03g010080.2N, BniB04g003870.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2353 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2555, Cgl06G0610 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g00880, gene.Cymno05g06760, gene.Cymno06g13420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-709 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.491, evm.TU.LG07.1457 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013298, Pov_00020223 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04940, Lb2G12568 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.640, BH07.765, CH01.1590 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0104340, gene-QOZ80_2BG0157710 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575360.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024795, gene-QYE76_027859, gene-QYE76_063220 |
| Poaceae | Oryza coarctata | 2 | Oco03G004510, Oco04G004500 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G066800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202228 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G033650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G346000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG024930, gene_TRIDC6BG030300 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G173400.1, TraesCS6B02G201100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb234770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33541, nbis-gene-44135 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12342, Zma_g15090 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG17.1533, evm.TU.LG18.374, evm.TU.LG26.662 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13621, nbisL1-mrna-25153 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17159, nbisL1-mrna-4193 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5034, nbisL1-mrna-9106 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.173, evm.TU.utg000008l.1343 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003954 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17451, nbisL1-mrna-3772 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22318, nbisL1-mrna-7857 |
| Salicaceae | Populus euphratica | 1 | populus_peu12919 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621244, gene-LOC132636185, gene-LOC132643604 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI001761000, SOLCI003611500, SOLCI006859700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107021858, gene-LOC107022430, gene-LOC107028206 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6479 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1495 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36770.v3.1 |