Basic Information
Locus ID:
Ag6G02488
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 257269456 | 257272480 | - | Ag6G02488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 89,767.27 Da | 36.36 | 83.16 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 45 | 155 | 2.9692E-22 | IPR001480 |
| CDD | cd14066 | STKc_IRAK | 494 | 759 | 9.37482E-91 | - |
| Pfam | PF01453 | D-mannose binding lectin | 83 | 166 | 2.5E-18 | IPR001480 |
| Pfam | PF00069 | Protein kinase domain | 492 | 755 | 1.2E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 467 | 759 | 5.26E-79 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 75 | 209 | 1.28E-24 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 563 | 763 | 4.9E-61 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 153 | 250 | 5.3E-5 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 45 | 152 | 1.9E-15 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 453 | 562 | 1.9E-29 | - |
| Gene3D | G3DSA:3.50.4.10 | Hepatocyte Growth Factor | 342 | 421 | 3.7E-5 | - |
| SMART | SM00108 | blect_4 | 43 | 155 | 1.6E-20 | IPR001480 |
| SMART | SM00220 | serkin_6 | 488 | 757 | 3.3E-32 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 4 | 807 | 5.4E-205 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 488 | 760 | 36.668556 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 37 | 153 | 13.182348 | IPR001480 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 494 | 516 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 608 | 620 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32300.1 | S-domain-2 5. | 0 |
| RefSeq | XP_017236434.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Daucus carota subsp. sativus] | 0 |
| Q8RWZ5 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161Y9I8 | Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001513 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.785351 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.072944 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.854479 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.699385 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.856293 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.107195 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.518933 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.534087 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.299922 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.229174 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.006694 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.704849 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.769509 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.637856 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.827265 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.096489 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.192413 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.236965 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.980327 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.218275 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.748291 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.666333 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.795195 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.081396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.052672 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.542892 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.690297 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.823328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.678981 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.771433 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.422495 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.969917 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.394944 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.235016 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.189152 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.793662 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.346632 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.501581 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.114442 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.46554 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.41587 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.000745 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.32401 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.84002 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.836709 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.601504 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.574915 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.047151 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.701997 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.223673 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36590, jg4619 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25178, gene_25180 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010571, Ah034697 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g030270, BVRB_2g030280 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21815, Sbi_jg21817, Sbi_jg29471, Sbi_jg29472 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15931, Seu_jg15932 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00005171, GOSA_00005172, GOSA_00008551, GOSA_00008552 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl55923, Sgl61929, Sgl63227, Sgl63228, Sgl63362, Sgl63363 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016950, gene:ENSEOMG00000050154 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1BG0021250, CQ.Regalona.r1.1BG0021260 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30128210, pistato.v30128230, pistato.v30250080 |
| Apiaceae | Apium graveolens | 4 | Ag11G04428, Ag3G00508, Ag6G02488, Ag7G01957 |
| Arecaceae | Cocos nucifera | 1 | scaffold102186G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120111958 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2484.V1.1, AsparagusV1_01.2486.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G05763, Ftri16G06898 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G32300.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30070.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g085810.2N, BniB03g010020.2N, BniB05g005760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0310, Ceq02G0313, Ceq02G0314, Ceq04G2345 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl02G0322, Cgl02G0324, Cgl02G0325, Cgl04G2550 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g13590, gene.Cymno06g01850 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32480, gene.Thate06g14950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-296, nbisL1-mrna-4498 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.479, evm.TU.LG01.480, evm.TU.LG07.1450 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00013308, Pov_00013322, Pov_00013341, Pov_00013351 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37072, Lb0G37859, Lb0G37860, Lb3G18277 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1437, BH06.1443, CH06.1600 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0519810, gene-QOZ80_6BG0472010 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0233690.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029684 |
| Poaceae | Oryza coarctata | 2 | Oco11G008660, Oco12G008650 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g29810.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G117000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403910 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G002270, Chr11G016380, Chr14G005760, Chr21G006270 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G161700, Tel3E01G778400, Tel7E01G415100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG011020, gene_TRIDC3BG014880 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G091800.1, TraesCS3B02G107000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb382120_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-28870, nbis-gene-43765, nbis-gene-55176 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29644, Zma_g31854 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1781, evm.TU.LG06.593 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25420 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1271 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27144, nbisL1-mrna-27328 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20473 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.297 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20635, nbisL1-mrna-20636 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-978 |
| Salicaceae | Populus euphratica | 1 | populus_peu12900 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636203 |
| Solanaceae | Solanum chilense | 1 | SOLCI001146000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026740 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.19219_chr07_-, STRG.944_chr01_-, gene_10939 |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G1512, TC02G0509, TC08G2198, TC08G2202 |
| Zosteraceae | Zostera marina | 1 | Zosma05g28640.v3.1 |