halophFGD

Basic Information

Locus ID: Ag6G02443

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: SecA preprotein cross-linking domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	249778643	249801905	-	Ag6G02443

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.68	119,190.71 Da	42.26	91.31	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18803	SF2_C_secA	471	741	3.98465E-57	IPR044722
CDD	cd17928	DEXDc_SecA	109	465	9.02356E-124	-
Pfam	PF07517	SecA DEAD-like domain	79	452	5.0E-118	IPR011115
Pfam	PF01043	SecA preprotein cross-linking domain	306	409	1.2E-25	IPR011130
Pfam	PF07516	SecA Wing and Scaffold domain	771	1046	8.6E-44	IPR011116
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	468	757	7.31E-40	IPR027417
SUPERFAMILY	SSF81886	Helical scaffold and wing domains of SecA	778	1047	1.92E-37	IPR036266
SUPERFAMILY	SSF81767	Pre-protein crosslinking domain of SecA	297	418	1.22E-34	IPR036670
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	78	466	5.56E-73	IPR027417
Gene3D	G3DSA:3.90.1440.10	-	299	419	4.8E-165	-
Gene3D	G3DSA:3.40.50.300	-	468	773	1.7E-75	IPR027417
Gene3D	G3DSA:3.40.50.300	-	88	466	4.8E-165	IPR027417
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	913	1050	1.7E-20	-
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	777	904	3.5E-13	-
SMART	SM00957	SecA_DEAD_2	74	453	1.8E-229	IPR011115
SMART	SM00958	SecA_PP_bind_2	298	409	1.1E-38	IPR011130
TIGRFAM	TIGR00963	secA: preprotein translocase, SecA subunit	95	866	5.3E-260	IPR000185
ProSiteProfiles	PS51196	SecA family profile.	70	773	130.258926	IPR014018
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	156	319	15.652176	IPR014001
ProSitePatterns	PS01312	SecA family signature.	553	568	-	IPR020937
PRINTS	PR00906	SecA protein signature	464	477	3.5E-62	IPR000185
PRINTS	PR00906	SecA protein signature	237	257	3.5E-62	IPR000185
PRINTS	PR00906	SecA protein signature	427	444	3.5E-62	IPR000185
PRINTS	PR00906	SecA protein signature	390	412	3.5E-62	IPR000185
PRINTS	PR00906	SecA protein signature	184	194	3.5E-62	IPR000185
PRINTS	PR00906	SecA protein signature	130	154	3.5E-62	IPR000185
PRINTS	PR00906	SecA protein signature	168	182	3.5E-62	IPR000185
Hamap	MF_01382	Protein translocase subunit SecA [secA].	70	1049	17.489616	IPR000185

Gene Ontology

Biological Process:

GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)

Molecular Function:

GO:0005524 (ATP binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])

Pathway:

ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21650.2	Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
RefSeq	XP_017258433.1	PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	D8WUA4	Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1
TrEMBL	F6H0I5	Protein translocase subunit SecA OS=Vitis vinifera OX=29760 GN=VIT_18s0001g01860 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	9.392668	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.083858	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.219162	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.971669	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	7.021375	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.481421	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.174697	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.048278	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	12.497491	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	13.61598	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.242005	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	13.158595	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	12.060699	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.064387	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.018991	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.638791	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.472366	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.703467	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.977633	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.717882	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.311716	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.189467	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.177889	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.45015	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.741968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.297907	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.17631	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.357518	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.365497	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.071705		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.298392		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.615235		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.465282		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.4778		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.272294		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.684532		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.345576		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.97305		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.442697	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.931741	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.38398	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.616816	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.280591	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	8.476011	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.824701	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.35788	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	6.212311	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.017421	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.047522	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.992375	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg10458, jg9019
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1077, gene_13408
Amaranthaceae	Atriplex hortensis	2	Ah024121, Ah031607
Amaranthaceae	Beta vulgaris	2	BVRB_1g010050, BVRB_5g122730
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... Sbi_jg58084
Amaranthaceae	Salicornia europaea	2	Seu_jg25704, Seu_jg7111
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004576, GOSA_00020180
Amaranthaceae	Suaeda glauca	4	Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae	Pistacia vera	2	pistato.v30007280, pistato.v30039110
Apiaceae	Apium graveolens	3	Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae	Cocos nucifera	2	COCNU_01G000270, COCNU_15G003170
Arecaceae	Phoenix dactylifera	2	gene-LOC103701417, gene-LOC103720122
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G32559, Ftri18G11286
Brassicaceae	Arabidopsis thaliana	2	AT1G21650.3, AT4G01800.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae	Brassica nigra	2	BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1867, Ceq06G0547
Casuarinaceae	Casuarina glauca	2	Cgl03G2007, Cgl06G0567
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae	Dunaliella salina	2	Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae	Plantago ovata	2	Pov_00016539, Pov_00021694
Plumbaginaceae	Limonium bicolor	2	Lb4G22942, Lb6G30841
Poaceae	Echinochloa crus-galli	5	AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae	Oryza coarctata	3	Oco01G009280, Oco02G009570, Oco22G003520
Poaceae	Oryza sativa	2	LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G139800, gene-BS78_05G097000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0103927, Pt_Chr0603665
Poaceae	Sporobolus alterniflorus	6	Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... Chr16G010730, Chr17G009810
Poaceae	Thinopyrum elongatum	2	Tel3E01G338700, Tel4E01G158600
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae	Triticum aestivum	6	TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae	Zea mays	2	Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae	Zoysia japonica	2	nbis-gene-27238, nbis-gene-6517
Poaceae	Zoysia macrostachya	2	Zma_g10242, Zma_g18533
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae	Kandelia obovata	2	Maker00011737, Maker00013085
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae	Populus euphratica	2	populus_peu27429, populus_peu32459
Solanaceae	Lycium barbarum	2	gene-LOC132627149, gene-LOC132644885
Solanaceae	Solanum chilense	2	SOLCI001197400, SOLCI003112400
Solanaceae	Solanum pennellii	2	gene-LOC107002391, gene-LOC107004481
Tamaricaceae	Reaumuria soongarica	2	gene_17557, gene_866
Tamaricaceae	Tamarix chinensis	2	TC03G2545, TC07G1717
Zosteraceae	Zostera marina	4	Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... Zosma07g00120.v3.1