halophFGD

Basic Information

Locus ID: Ag6G02420

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Sister chromatid cohesion protein PDS5 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	247587672	247595823	-	Ag6G02420

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.11	120,334.15 Da	49.50	63.95	-0.95

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04508	TUDOR	885	925	0.00727439	IPR002999
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	882	926	4.66E-7	-
SUPERFAMILY	SSF48371	ARM repeat	30	243	7.2E-9	IPR016024
Gene3D	G3DSA:2.30.30.140	-	881	930	5.1E-12	-
MobiDBLite	mobidb-lite	consensus disorder prediction	487	507	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	792	840	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	719	751	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	676	702	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	848	862	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	971	1002	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	331	345	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	405	438	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	442	470	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	935	1112	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	374	874	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	313	330	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	545	560	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	291	346	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1003	1023	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	661	675	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1052	1075	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	948	970	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	577	660	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1030	1051	-	-

KEGG Pathway

KO Term:

K11267 (sister chromatid cohesion protein PDS5)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G31880.2
RefSeq	XP_017256125.1	PREDICTED: dentin sialophosphoprotein-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8GUP3	Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1
TrEMBL	A0A164V430	Tudor domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022853 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	59.969173	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	46.936733	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	59.970325	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	61.604603	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	57.538193	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	70.014153	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	65.697113	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	78.068039	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	104.771179	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	98.143074	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	105.713028	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	112.688293	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	100.173149	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	84.186058	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.849831	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	23.43873	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	27.142397	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	39.867775	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	26.032606	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	47.379436	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	46.950275	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	40.674637	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	39.780262	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	38.368008	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	42.322311	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	38.803329	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	30.907318	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	33.368	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	38.072403	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.202525		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.565878		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	13.395477		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	33.359509		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	33.988655		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	38.058258		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	20.675507		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.283131		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	20.423321		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	45.369198	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	21.574696	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.63982	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	65.540138	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	64.37925	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	103.578064	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	87.146248	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	51.709515	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	69.066719	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	48.186878	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	60.066223	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	50.435562	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13469, jg18308, jg24038, jg27134, jg36564
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26270, gene_8191
Amaranthaceae	Atriplex hortensis	2	Ah009214, Ah034859
Amaranthaceae	Beta vulgaris	2	BVRB_2g031360, BVRB_9g223100
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11690, Sbi_jg21058, Sbi_jg22739, Sbi_jg42119 ... Sbi_jg42120, Sbi_jg44693, Sbi_jg46711
Amaranthaceae	Salicornia europaea	3	Seu_jg16614, Seu_jg20938, Seu_jg27402
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00005084, GOSA_00018267, GOSA_00018269, GOSA_00018270 ... GOSA_00018272
Amaranthaceae	Suaeda glauca	5	Sgl55357, Sgl60618, Sgl60704, Sgl62411, Sgl66960
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000017363, gene:ENSEOMG00000019114 ... gene:ENSEOMG00000023791, gene:ENSEOMG00000024921, gene:ENSEOMG00000039337, gene:ENSEOMG00000051628
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0022000, CQ.Regalona.r1.2AG0023810 ... CQ.Regalona.r1.7BG0000100, CQ.Regalona.r1.9AG0024320
Anacardiaceae	Pistacia vera	2	pistato.v30129990, pistato.v30250860
Apiaceae	Apium graveolens	7	Ag11G04493, Ag4G00082, Ag5G00176, Ag6G02420, Ag7G01896 ... Ag8G02082, Ag9G01196
Arecaceae	Cocos nucifera	2	COCNU_01G005200, COCNU_11G011990
Arecaceae	Phoenix dactylifera	3	gene-LOC103710418, gene-LOC103714235, gene-LOC113462467
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1855.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G09438, Ftri14G32204, Ftri18G28033, Ftri1G09744 ... Ftri7G06025
Brassicaceae	Arabidopsis thaliana	3	AT1G15940.1, AT1G80810.2, AT4G31880.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006733m.g.v1.0, Thhalv10018162m.g.v1.0 ... Thhalv10024366m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g14250.v2.2, Sp5g22150.v2.2, Sp5g34950.v2.2 ... Sp7g29700.v2.2
Brassicaceae	Brassica nigra	7	BniB02g085620.2N, BniB03g006560.2N, BniB03g026620.2N ... BniB05g006130.2N, BniB06g041310.2N, BniB06g051250.2N, BniB06g068160.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0403, Ceq04G2420
Casuarinaceae	Casuarina glauca	2	Cgl02G0428, Cgl04G2624
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g05230, gene.Cymno06g07760
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g06230, gene.Thate05g06250, gene.Thate07g07700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-320
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.805, evm.TU.LG07.1519
Plantaginaceae	Plantago ovata	9	Pov_00004765, Pov_00010802, Pov_00010907, Pov_00011899 ... Pov_00019396, Pov_00020147, Pov_00034210, Pov_00034716, Pov_00041611
Plumbaginaceae	Limonium bicolor	4	Lb1G00078, Lb3G17889, Lb3G18393, Lb4G22655
Poaceae	Echinochloa crus-galli	5	AH07.2581, AH09.1472, BH07.2393, CH07.2467, CH09.1764
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0137270, gene-QOZ80_2BG0192870 ... gene-QOZ80_4AG0311680, gene-QOZ80_4BG0342980
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0179330.1, HORVU.MOREX.r3.6HG0593920.1
Poaceae	Lolium multiflorum	1	gene-QYE76_023570
Poaceae	Oryza coarctata	5	Oco03G015180, Oco04G015710, Oco07G009910, Oco08G003150 ... Oco08G009690
Poaceae	Oryza sativa	2	LOC_Os02g39920.1, LOC_Os04g42320.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G194200, gene-BS78_06G150800
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0203991, Pt_Chr0203993, Pt_Chr0204573, Pt_Chr0204630 ... Pt_Chr0302219
Poaceae	Sporobolus alterniflorus	13	Chr03G008080, Chr06G008440, Chr09G026030, Chr13G007710 ... Chr15G009960, Chr16G008630, Chr16G011930, Chr17G011050, Chr17G011060, Chr23G009470, Chr26G010260, Chr29G007660, Chr29G007680
Poaceae	Thinopyrum elongatum	2	Tel2E01G623500, Tel6E01G426300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG051660, gene_TRIDC2BG055000 ... gene_TRIDC6AG034150, gene_TRIDC6BG040720
Poaceae	Triticum aestivum	7	TraesCS2A02G356300.2, TraesCS2A02G517400.1 ... TraesCS2B02G375600.1, TraesCS2D02G355200.2, TraesCS6A02G231400.3, TraesCS6B02G249900.1, TraesCS6D02G203700.3
Poaceae	Zea mays	7	Zm00001eb078170_P001, Zm00001eb184560_P003 ... Zm00001eb203440_P001, Zm00001eb213590_P001, Zm00001eb246990_P002, Zm00001eb422240_P001, Zm00001eb425970_P001
Poaceae	Zoysia japonica	2	nbis-gene-18548, nbis-gene-29669
Poaceae	Zoysia macrostachya	3	Zma_g13882, Zma_g16658, Zma_g21032
Portulacaceae	Portulaca oleracea	6	evm.TU.LG07.1272, evm.TU.LG07.1843, evm.TU.LG07.602 ... evm.TU.LG15.1321, evm.TU.LG15.341, evm.TU.LG22.728
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g08140, gene.Posoc02g24140, gene.Posoc03g12680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.897, evm.TU.Scaffold_11_RagTag.618 ... evm.TU.Scaffold_4_RagTag.1443
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-13577, nbisL1-mrna-19018, nbisL1-mrna-26284 ... nbisL1-mrna-6706, nbisL1-mrna-9266
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4093, nbisL1-mrna-975
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-9149
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.204, evm.TU.utg000005l.54 ... evm.TU.utg000008l.781
Rhizophoraceae	Kandelia obovata	3	Maker00001451, Maker00004260, Maker00008799
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1006, nbisL1-mrna-2268, nbisL1-mrna-3738
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7812, nbisL1-mrna-9712
Salicaceae	Populus euphratica	5	populus_peu04093, populus_peu04697, populus_peu05608 ... populus_peu12994, populus_peu34926
Solanaceae	Lycium barbarum	4	gene-LOC132598943, gene-LOC132628439, gene-LOC132633022 ... gene-LOC132643786
Solanaceae	Solanum chilense	5	SOLCI001041300, SOLCI001172100, SOLCI002190800 ... SOLCI006736600, SOLCI006785600
Solanaceae	Solanum pennellii	7	gene-LOC107012099, gene-LOC107012321, gene-LOC107013637 ... gene-LOC107015433, gene-LOC107021116, gene-LOC107023113, gene-LOC114076028
Tamaricaceae	Reaumuria soongarica	2	STRG.1041_chr01_+, gene_6396
Tamaricaceae	Tamarix chinensis	2	TC01G1045, TC10G2409
Zosteraceae	Zostera marina	5	Zosma01g04220.v3.1, Zosma03g06350.v3.1, Zosma05g32680.v3.1 ... Zosma06g14340.v3.1, Zosma154g00110.v3.1