halophFGD

Basic Information

Locus ID: Ag6G02374

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD-40 repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	244058497	244061363	-	Ag6G02374

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.90	19,853.22 Da	43.57	97.97	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12265	Histone-binding protein RBBP4 or subunit C of CAF1 complex	16	80	1.6E-21	IPR022052
SUPERFAMILY	SSF50978	WD40 repeat-like	122	175	2.38E-5	IPR036322
Gene3D	G3DSA:2.130.10.10	-	6	121	8.3E-28	IPR015943
Gene3D	G3DSA:2.130.10.10	-	122	175	5.6E-9	IPR015943

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10752 (histone-binding protein RBBP4)

Pathway:

ko04218 (Cellular senescence) map04218 (Cellular senescence)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G16780.1	Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1.
RefSeq	XP_017259179.1	PREDICTED: WD-40 repeat-containing protein MSI2-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	O22468	WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1
TrEMBL	A0A164V585	CAF1C_H4-bd domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022811 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.350607	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.598443	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.390974	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.351618	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.927727	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.451919	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.205559	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.73981	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	39.955101	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	47.383831	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	56.733002	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	50.635036	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	38.181534	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	36.696522	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.692182	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.996171	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.580161	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.901011	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.682478	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.884274	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.964713	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.227706	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.402984	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.888918	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.149199	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.756328	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.273365	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.783282	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.335635	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.978905		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.228908		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.200591		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.701409		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.072205		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.193021		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.31962		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.793784		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.544275		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.676931	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.077192	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.794641	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.820287	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.198579	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	14.958605	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.162532	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.7652	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.81216	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	32.261238	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	23.483999	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	22.753616	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg26393, jg28419, jg28873, jg30101
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13100, gene_21909
Amaranthaceae	Atriplex hortensis	1	Ah009662
Amaranthaceae	Beta vulgaris	2	BVRB_2g034770, BVRB_9g214050
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12230, Sbi_jg20493, Sbi_jg23279, Sbi_jg47198
Amaranthaceae	Salicornia europaea	2	Seu_jg17076, Seu_jg21471
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009128, GOSA_00020443
Amaranthaceae	Suaeda glauca	6	Sgl55460, Sgl56111, Sgl61444, Sgl63540, Sgl68020, Sgl68024
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000018069, gene:ENSEOMG00000019355 ... gene:ENSEOMG00000021669, gene:ENSEOMG00000048823, gene:ENSEOMG00000052523
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0013320, CQ.Regalona.r1.2BG0015290 ... CQ.Regalona.r1.7BG0002860, CQ.Regalona.r1.9AG0021760
Anacardiaceae	Pistacia vera	4	pistato.v30110120, pistato.v30212620, pistato.v30243100 ... pistato.v30279940
Apiaceae	Apium graveolens	3	Ag3G00792, Ag6G02374, Ag7G01979
Arecaceae	Cocos nucifera	3	COCNU_09G004560, COCNU_12G000390, COCNU_14G008890
Arecaceae	Phoenix dactylifera	4	gene-LOC103710495, gene-LOC103719231, gene-LOC103723090 ... gene-LOC120112753
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.2205.V1.1, AsparagusV1_06.1928.V1.1 ... AsparagusV1_06.1929.V1.1, AsparagusV1_07.2656.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G24913, Ftri15G11587, Ftri15G12518, Ftri15G27512
Brassicaceae	Arabidopsis thaliana	3	AT2G16780.1, AT4G35050.1, AT5G58230.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10013638m.g.v1.0, Thhalv10022705m.g.v1.0 ... Thhalv10025286m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g29950.v2.2, Sp6g19890.v2.2, Sp7g32820.v2.2
Brassicaceae	Brassica nigra	6	BniB02g012940.2N, BniB02g037620.2N, BniB03g064170.2N ... BniB04g026550.2N, BniB05g037850.2N, BniB08g013340.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1710
Casuarinaceae	Casuarina glauca	2	Cgl05G0979, Cgl07G1855
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno11g10790, gene.Cymno13g02630
Dunaliellaceae	Dunaliella salina	1	Dusal.0084s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g00090, gene.Thate04g17070, gene.Thate07g18680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9461
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2304, evm.TU.LG08.317
Plantaginaceae	Plantago ovata	3	Pov_00002034, Pov_00007352, Pov_00037619
Plumbaginaceae	Limonium bicolor	5	Lb2G08459, Lb2G12725, Lb2G12726, Lb3G17633, Lb5G27625
Poaceae	Echinochloa crus-galli	6	AH01.1247, AH03.2770, BH01.1476, BH03.2915, CH03.3116 ... CH06.2650
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0224440, gene-QOZ80_3BG0269480 ... gene-QOZ80_6AG0527890
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0500740.1, HORVU.MOREX.r3.5HG0508600.1
Poaceae	Lolium multiflorum	2	gene-QYE76_007251, gene-QYE76_063518
Poaceae	Oryza coarctata	4	Oco05G018780, Oco06G019570, Oco17G010710, Oco18G010650
Poaceae	Oryza sativa	2	LOC_Os03g43890.1, LOC_Os09g36900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G145400, gene-BS78_02G258500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104479, Pt_Chr0104740, Pt_Chr0701064, Pt_Chr0701089
Poaceae	Sporobolus alterniflorus	7	Chr01G009470, Chr04G024760, Chr10G014410, Chr11G007880 ... Chr12G027520, Chr14G009940, Chr21G010090
Poaceae	Thinopyrum elongatum	4	Tel3E01G109700, Tel5E01G527000, Tel5E01G597900 ... Tel5E01G680900
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG048970, gene_TRIDC5AG055010 ... gene_TRIDC5BG052880, gene_TRIDC5BG058930
Poaceae	Triticum aestivum	7	TraesCS5A02G331900.1, TraesCS5B02G332200.1 ... TraesCS5B02G378700.1, TraesCS5D02G337800.1, TraesCS5D02G385600.1, TraesCS5D02G385800.1, TraesCSU02G072700.1
Poaceae	Zea mays	4	Zm00001eb050670_P002, Zm00001eb050680_P002 ... Zm00001eb218750_P001, Zm00001eb331890_P002
Poaceae	Zoysia japonica	5	nbis-gene-20452, nbis-gene-20453, nbis-gene-35216 ... nbis-gene-39616, nbis-gene-39617
Poaceae	Zoysia macrostachya	3	Zma_g3200, Zma_g32167, Zma_g880
Portulacaceae	Portulaca oleracea	4	evm.TU.LG07.860, evm.TU.LG08.1124, evm.TU.LG15.72 ... evm.TU.LG22.870
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g05540, gene.Posoc10g05400
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_18_RagTag.147, evm.TU.Scaffold_2_RagTag.90
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28415, nbisL1-mrna-5119
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10998, nbisL1-mrna-19423
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19025, nbisL1-mrna-9346
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.1185, evm.TU.utg000034l.13
Rhizophoraceae	Kandelia obovata	2	Maker00005808, Maker00018781
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14125, nbisL1-mrna-15735
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21156, nbisL1-mrna-22924
Salicaceae	Populus euphratica	8	populus_peu08700, populus_peu26699, populus_peu26743 ... populus_peu31132, populus_peu36650, populus_peu37870, populus_peu38113, populus_peu38130
Solanaceae	Lycium barbarum	2	gene-LOC132598732, gene-LOC132599329
Solanaceae	Solanum chilense	2	SOLCI002790400, SOLCI006583800
Solanaceae	Solanum pennellii	2	gene-LOC107003156, gene-LOC107008415
Tamaricaceae	Reaumuria soongarica	3	STRG.7683_chr05_+, gene_18049, gene_8872
Tamaricaceae	Tamarix chinensis	3	TC02G1002, TC10G0136, TC11G1524
Zosteraceae	Zostera marina	2	Zosma03g21330.v3.1, Zosma03g23820.v3.1