Basic Information
Locus ID:
Ag6G02372
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 244012737 | 244016071 | + | Ag6G02372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 74,017.66 Da | 43.71 | 84.72 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00293 | USP_Like | 10 | 102 | 4.86309E-8 | - |
| Pfam | PF00582 | Universal stress protein family | 8 | 125 | 7.5E-6 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 325 | 526 | 6.1E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 304 | 594 | 6.47E-74 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 8 | 113 | 4.5E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 398 | 623 | 4.8E-58 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 8 | 134 | 7.1E-9 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 296 | 397 | 5.8E-25 | - |
| SMART | SM00220 | serkin_6 | 323 | 593 | 8.5E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 323 | 600 | 34.237507 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 444 | 456 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16750.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_017255315.1 | PREDICTED: serine/threonine-protein kinase CDG1-like [Daucus carota subsp. sativus] | 0 |
| B5X4Z9 | Protein kinase STUNTED OS=Arabidopsis thaliana OX=3702 GN=STU PE=2 SV=1 | 0 | |
| TrEMBL | A0A164V5B2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022809 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.303771 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.569877 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.105384 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.000608 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.784342 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.762949 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.649949 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.415435 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.216087 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.594976 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.134113 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.366047 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.817951 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.443089 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.501344 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.749932 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.034391 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.745296 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.587262 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.870659 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.523388 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.896245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.909221 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.093678 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.088636 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.175924 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.921338 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.785638 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.102908 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.18589 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.413073 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.461251 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.146175 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.997664 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.473146 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.465148 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.219331 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.0768 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.426099 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.659826 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.562161 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 134.711182 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 66.239304 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 43.884399 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.507799 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 80.462578 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.248541 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.702909 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.390664 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.50339 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26137, jg28871, jg891 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26687 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009664 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12227, Sbi_jg47195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21468 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020441 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55457, Sgl56115, Sgl61448 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016335, gene:ENSEOMG00000037955 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0002880, CQ.Regalona.r1.9AG0021740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30110150 |
| Apiaceae | Apium graveolens | 2 | Ag6G02372, Ag9G02108 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G002600, COCNU_10G001750 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714632, gene-LOC103724130 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2127.V1.1, AsparagusV1_10.186.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G11923 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G16750.1, AT4G35030.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022595m.g.v1.0, Thhalv10026926m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g29970.v2.2, Sp7g32800.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g064130.2N, BniB04g026570.2N, BniB05g003320.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1707 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1852 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g21590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-9458, nbisL1-mrna-9459 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.313 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001657, Pov_00007356 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G13729, Lb3G17629, Lb8G36094 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4378, CH01.4998, Contig192.19 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0240430, gene-QOZ80_3BG0287560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0392940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069365 |
| Poaceae | Oryza coarctata | 2 | Oco05G007770, Oco06G008080 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g13820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G422200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101989 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G029100, Chr12G010420 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG010250, gene_TRIDC4BG040330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G072300.1, TraesCS4B02G228200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb010320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2326 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1678 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1826, evm.TU.LG08.1126, evm.TU.LG09.114 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2318, evm.TU.Scaffold_2_RagTag.93 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5116 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11001, nbisL1-mrna-7928 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3243, nbisL1-mrna-9350 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1183, evm.TU.utg000016l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006046, Maker00016776 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14126, nbisL1-mrna-4619 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21153, nbisL1-mrna-22459 |
| Salicaceae | Populus euphratica | 2 | populus_peu08702, populus_peu35415 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599327 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007907 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11790_chr02_-, gene_12323 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0129, TC12G0758 |
| Zosteraceae | Zostera marina | 2 | Zosma01g22190.v3.1, Zosma05g31140.v3.1 |