halophFGD

Basic Information

Locus ID: Ag6G02368

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	243816287	243828464	+	Ag6G02368

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.74	202,188.97 Da	49.79	88.34	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00078	HECTc	1460	1873	7.79008E-116	IPR000569
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	1508	1878	9.2E-80	IPR000569
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	1452	1871	1.15E-90	IPR035983
SUPERFAMILY	SSF48371	ARM repeat	80	630	1.46E-38	IPR016024
Gene3D	G3DSA:1.25.10.10	-	166	500	3.2E-50	IPR011989
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	1749	1876	1.7E-32	-
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	1400	1644	8.2E-44	-
SMART	SM00119	hect_3	1471	1878	5.8E-81	IPR000569
ProSiteProfiles	PS50237	HECT domain profile.	1547	1878	52.692677	IPR000569
MobiDBLite	mobidb-lite	consensus disorder prediction	10	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	651	666	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1065	1100	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1266	1292	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	956	1162	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	124	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1027	1064	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	73	108	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	651	684	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1125	1162	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	956	1004	-	-

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K10590 (E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
RefSeq	XP_017257692.1	PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6WWW4	E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1
TrEMBL	A0A164V636	HECT-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022772 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	48.290234	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	37.438046	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	40.618523	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	43.828548	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	47.800629	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	41.601185	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	48.856735	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	43.850872	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	47.276447	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	43.820969	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	46.116367	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	48.010323	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	51.189751	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	42.399769	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	13.315557	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	14.519162	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.948648	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.295195	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.998952	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	22.43671	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	28.386251	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	19.439695	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.81428	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	19.409414	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	18.904314	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	31.233614	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.790173	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	24.122644	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	27.654924	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.702933		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.864061		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.5268		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	27.920761		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.047022		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.72699		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.849979		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.641607		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.245832		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.011536	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.27404	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	11.402738	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.825194	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.683546	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	27.376802	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	23.686152	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	12.279808	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	32.900501	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	19.742159	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	22.182096	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.2071	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg26140, jg26141, jg30367, jg3439
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14181, gene_26684
Amaranthaceae	Atriplex hortensis	3	Ah009670, Ah030230, Ah030231
Amaranthaceae	Beta vulgaris	2	BVRB_7g166140, BVRB_9g214150
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12217, Sbi_jg27583, Sbi_jg32938, Sbi_jg47183
Amaranthaceae	Salicornia europaea	2	Seu_jg21459, Seu_jg7718
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012158, GOSA_00020435
Amaranthaceae	Suaeda glauca	11	Sgl04704, Sgl09751, Sgl53694, Sgl55448, Sgl56123, Sgl58952 ... Sgl61456, Sgl71552, Sgl75128, Sgl78910, Sgl81371
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000007962, gene:ENSEOMG00000018203 ... gene:ENSEOMG00000035897, gene:ENSEOMG00000039848, gene:ENSEOMG00000040251, gene:ENSEOMG00000049829, gene:ENSEOMG00000052485
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0017020, CQ.Regalona.r1.7BG0002930 ... CQ.Regalona.r1.7BG0019270, CQ.Regalona.r1.9AG0021670
Anacardiaceae	Pistacia vera	3	pistato.v30110200, pistato.v30112070, pistato.v30271920
Apiaceae	Apium graveolens	4	Ag1G00966, Ag2G02902, Ag6G02368, Ag7G01811
Arecaceae	Cocos nucifera	4	COCNU_04G002900, COCNU_07G002550, COCNU_10G001730 ... COCNU_12G006990
Arecaceae	Phoenix dactylifera	4	gene-LOC103702862, gene-LOC103706183, gene-LOC103714627 ... gene-LOC103718136
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.230.V1.1, AsparagusV1_03.1186.V1.1 ... AsparagusV1_05.427.V1.1, AsparagusV1_07.1545.V1.1, AsparagusV1_Unassigned.626.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G29139, Ftri4G19903, FtriNA16380
Brassicaceae	Arabidopsis thaliana	2	AT4G38600.1, AT5G02880.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012430m.g.v1.0, Thhalv10024192m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g39710.v2.2, Sp7g37170.v2.2, SpUn0003_0090.v2.2
Brassicaceae	Brassica nigra	4	BniB02g089620.2N, BniB03g015710.2N, BniB05g030930.2N ... BniB08g000890.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1702
Casuarinaceae	Casuarina glauca	1	Cgl07G1848
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g09490
Dunaliellaceae	Dunaliella salina	1	Dusal.0067s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g33030, gene.Thate02g00190, gene.Thate08g21550
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3100, nbisL1-mrna-5931
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1378, evm.TU.LG08.308
Plantaginaceae	Plantago ovata	4	Pov_00001654, Pov_00005142, Pov_00005144, Pov_00007360
Plumbaginaceae	Limonium bicolor	3	Lb2G08531, Lb2G08534, Lb3G17625
Poaceae	Echinochloa crus-galli	13	AH04.969, AH05.2114, AH05.912, AH07.188, AH09.397, BH05.2251 ... BH05.877, BH07.15, BH09.443, BH09.444, CH03.4826, CH05.1005, CH05.2331
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0324970, gene-QOZ80_4BG0355480 ... gene-QOZ80_5AG0370300, gene-QOZ80_5AG0406890, gene-QOZ80_5BG0417820, gene-QOZ80_5BG0454990
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0012840.1, HORVU.MOREX.r3.1HG0072880.1 ... HORVU.MOREX.r3.2HG0105170.1, HORVU.MOREX.r3.6HG0539760.1
Poaceae	Lolium multiflorum	7	gene-QYE76_001380, gene-QYE76_009186, gene-QYE76_014261 ... gene-QYE76_038366, gene-QYE76_038367, gene-QYE76_038368, gene-QYE76_059983
Poaceae	Oryza coarctata	5	Oco03G000070, Oco04G000100, Oco09G011700, Oco10G001230 ... Oco10G011670
Poaceae	Oryza sativa	3	LOC_Os02g01170.1, LOC_Os05g03100.1, LOC_Os05g38830.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G002200, gene-BS78_04G002400 ... gene-BS78_06G049000, gene-BS78_09G024900, gene-BS78_09G170700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0200521, Pt_Chr0200527, Pt_Chr0305692, Pt_Chr0504683 ... Pt_Chr0504700
Poaceae	Sporobolus alterniflorus	10	Chr01G018920, Chr18G002160, Chr18G011450, Chr22G006240 ... Chr22G016120, Chr23G016950, Chr25G014140, Chr26G002880, Chr28G005860, Chr30G013980
Poaceae	Thinopyrum elongatum	4	Tel1E01G124300, Tel1E01G468100, Tel2E01G144000 ... Tel6E01G022500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG008100, gene_TRIDC1AG043160 ... gene_TRIDC1BG010250, gene_TRIDC1BG048970, gene_TRIDC2AG007120, gene_TRIDC2BG008280, gene_TRIDC6AG000450
Poaceae	Triticum aestivum	9	TraesCS1A02G059500.1, TraesCS1A02G288600.1 ... TraesCS1B02G298000.1, TraesCS1D02G287600.1, TraesCS2A02G064700.2, TraesCS2B02G076900.1, TraesCS6A02G003300.1, TraesCS6B02G000300.1, TraesCS6D02G005600.1
Poaceae	Zea mays	7	Zm00001eb063630_P001, Zm00001eb086710_P001 ... Zm00001eb210110_P001, Zm00001eb229270_P002, Zm00001eb265140_P001, Zm00001eb265580_P001, Zm00001eb351670_P003
Poaceae	Zoysia japonica	2	nbis-gene-53293, nbis-gene-53623
Poaceae	Zoysia macrostachya	3	Zma_g20996, Zma_g26333, Zma_g27047
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.1134, evm.TU.LG22.881
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g36030, gene.Posoc06g09370, gene.Posoc08g05620
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2315, evm.TU.Scaffold_2_RagTag.839 ... evm.TU.Scaffold_2_RagTag.98
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-21185, nbisL1-mrna-21212, nbisL1-mrna-4359 ... nbisL1-mrna-5110, nbisL1-mrna-6051
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11006, nbisL1-mrna-18782, nbisL1-mrna-7932
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-3247, nbisL1-mrna-9356, nbisL1-mrna-9956
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1177, evm.TU.utg000009l.856 ... evm.TU.utg000016l.67
Rhizophoraceae	Kandelia obovata	3	Maker00005333, Maker00005544, Maker00016262
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12657, nbisL1-mrna-14132, nbisL1-mrna-4623
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21149, nbisL1-mrna-22454, nbisL1-mrna-5891
Salicaceae	Populus euphratica	4	populus_peu11739, populus_peu11740, populus_peu36641 ... populus_peu36642
Solanaceae	Lycium barbarum	3	gene-LOC132599324, gene-LOC132606635, gene-LOC132630104
Solanaceae	Solanum chilense	3	SOLCI000383500, SOLCI001507700, SOLCI006583100
Solanaceae	Solanum pennellii	3	gene-LOC107001174, gene-LOC107002180, gene-LOC107031691
Tamaricaceae	Reaumuria soongarica	3	gene_12324, gene_5622, gene_7972
Tamaricaceae	Tamarix chinensis	2	TC02G1852, TC12G0755
Zosteraceae	Zostera marina	3	Zosma01g00220.v3.1, Zosma01g00230.v3.1, Zosma06g11550.v3.1