halophFGD

Basic Information

Locus ID: Ag6G02292

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: B3 domain-containing

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	229408810	229413101	-	Ag6G02292

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.50	52,235.69 Da	35.11	88.86	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10017	B3_DNA	394	448	1.27088E-6	IPR003340
Pfam	PF02362	B3 DNA binding domain	394	448	3.3E-7	IPR003340
SUPERFAMILY	SSF101936	DNA-binding pseudobarrel domain	352	447	5.3E-11	IPR015300
SUPERFAMILY	SSF101936	DNA-binding pseudobarrel domain	128	221	3.14E-9	IPR015300
Gene3D	G3DSA:2.40.330.10	-	338	451	5.0E-10	IPR015300
Gene3D	G3DSA:2.40.330.10	-	127	221	1.3E-8	IPR015300
SMART	SM01019	B3_2	130	219	0.087	IPR003340
SMART	SM01019	B3_2	356	450	0.02	IPR003340
ProSiteProfiles	PS50863	B3 DNA-binding domain profile.	396	450	9.629154	IPR003340

Gene Ontology

Molecular Function:

GO:0003677 (DNA binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017233687.1	PREDICTED: uncharacterized protein LOC108207768 [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B6S5	TF-B3 domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_028131 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.127463	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.289198	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.167668	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.762929	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.577486	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.532024	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.058489	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.173257	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.060739	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.172568	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.423595	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.00627	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.169531	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.165377	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.508412	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.189013	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.080522	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.357667	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.146245	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.303826	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.33398	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.112498	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.082283		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.095995		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.2972		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.082667		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.070103		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.152935		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.381205	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.134351	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.832217	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.271444	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.087278	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.83754	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.272498	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.303047	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.11264	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.027672	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	54	Ag10G00036, Ag10G00367, Ag10G00397, Ag10G00497, Ag10G00882 ... Ag10G01468, Ag10G02245, Ag10G02571, Ag11G03125, Ag11G03221, Ag11G03736, Ag11G04345, Ag1G00421, Ag1G01521, Ag2G00028, Ag2G01815, Ag2G01816, Ag2G01884, Ag2G02830, Ag3G01321, Ag3G01912, Ag4G00031, Ag4G00961, Ag4G01758, Ag4G02255, Ag4G02624, Ag5G00349, Ag5G00350, Ag5G00351, Ag5G00354, Ag5G01411, Ag5G02348, Ag5G02349, Ag6G00668, Ag6G01935, Ag6G02292, Ag6G02359, Ag6G02503, Ag7G00385, Ag7G01462, Ag7G01879, Ag8G00346, Ag8G00534, Ag8G00941, Ag8G02087, Ag9G00316, Ag9G00814, Ag9G01964, Ag9G02056, Ag9G02345, AgUnG00453, AgUnG00938, AgUnG01552, AgUnG01567