halophFGD

Basic Information

Locus ID: Ag6G02279

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Alkaline neutral invertase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	226363300	226370393	-	Ag6G02279

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.19	72,228.82 Da	45.85	87.18	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12899	Alkaline and neutral invertase	156	597	1.6E-214	IPR024746
SUPERFAMILY	SSF48208	Six-hairpin glycosidases	150	600	6.38E-50	IPR008928
Gene3D	G3DSA:1.50.10.10	-	184	590	2.9E-11	IPR012341

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0033926 (endo-alpha-N-acetylgalactosaminidase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G22510.1	alkaline/neutral invertase. Encodes a chloroplast-targeted alkaline/neutral invertase that is implicated in the development of the photosynthetic apparatus and nitrogen assimilation in seedlings to control the sucrose to hexose ratio.
RefSeq	XP_017258042.1	PREDICTED: alkaline/neutral invertase E, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FK88	Alkaline/neutral invertase E, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=INVE PE=1 SV=1
TrEMBL	A0A164V2Y4	Alkaline/neutral invertase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022899 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	23.544689	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	23.332775	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	18.804588	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.826303	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.437584	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.717855	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	15.184156	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.520946	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.803281	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.139605	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.397436	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.80197	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.272383	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.130668	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	19.562677	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	23.20586	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.696391	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	32.651814	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	32.019974	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.781593	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	32.859402	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.873072	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.9692	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.66334	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.168531	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	30.73181	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	23.757393	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.629427	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	27.991741	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	21.00408		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	23.073883		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	20.727594		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	40.215714		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	18.974291		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	37.443092		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	38.661377		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	25.244017		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	31.477013		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.151639	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.764926	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	36.172112	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.942997	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.974241	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.850821	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	19.277256	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.830278	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.630133	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.893356	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.560714	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.168843	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16461, jg28272, jg29992, jg5619
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10247, gene_2723, gene_6784, gene_8401
Amaranthaceae	Atriplex hortensis	3	Ah005342, Ah007035, Ah019987
Amaranthaceae	Beta vulgaris	1	BVRB_4g080050
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17561, Sbi_jg26994, Sbi_jg33558, Sbi_jg36017 ... Sbi_jg517, Sbi_jg62210
Amaranthaceae	Salicornia europaea	3	Seu_jg4101, Seu_jg814, Seu_jg8262
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002937, GOSA_00003633, GOSA_00007417, GOSA_00027825
Amaranthaceae	Suaeda glauca	8	Sgl01588, Sgl06757, Sgl19325, Sgl21026, Sgl24116, Sgl29295 ... Sgl73271, Sgl76792
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000007818, gene:ENSEOMG00000009886 ... gene:ENSEOMG00000010920, gene:ENSEOMG00000014735, gene:ENSEOMG00000028920, gene:ENSEOMG00000029007, gene:ENSEOMG00000030010, gene:ENSEOMG00000036992, gene:ENSEOMG00000039773, gene:ENSEOMG00000041490, gene:ENSEOMG00000042111, gene:ENSEOMG00000044468
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0012910, CQ.Regalona.r1.3BG0012950 ... CQ.Regalona.r1.4AG0004610, CQ.Regalona.r1.4AG0013000, CQ.Regalona.r1.4BG0004620, CQ.Regalona.r1.4BG0014570, CQ.Regalona.r1.9BG0005260
Anacardiaceae	Pistacia vera	4	pistato.v30057010, pistato.v30080870, pistato.v30169810 ... pistato.v30232690
Apiaceae	Apium graveolens	5	Ag11G04364, Ag1G00550, Ag6G02013, Ag6G02279, Ag9G01926
Arecaceae	Cocos nucifera	2	COCNU_01G000780, COCNU_16G004870
Arecaceae	Phoenix dactylifera	3	gene-LOC103706133, gene-LOC103709680, gene-LOC103710534
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.2225.V1.1, AsparagusV1_02.852.V1.1 ... AsparagusV1_07.1207.V1.1, AsparagusV1_08.3253.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G16079, Ftri16G05451, Ftri18G12267, Ftri2G13905 ... Ftri8G21164
Brassicaceae	Arabidopsis thaliana	4	AT1G56560.1, AT3G05820.1, AT3G06500.1, AT5G22510.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10012973m.g.v1.0, Thhalv10020219m.g.v1.0 ... Thhalv10020291m.g.v1.0, Thhalv10023341m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g06210.v2.2, Sp3g04680.v2.2, Sp3g05450.v2.2 ... Sp6g22750.v2.2
Brassicaceae	Brassica nigra	4	BniB01g057140.2N, BniB02g041060.2N, BniB02g060110.2N ... BniB07g059970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq05G1201, Ceq05G1766, Ceq06G1096, Ceq09G1389
Casuarinaceae	Casuarina glauca	4	Cgl05G1212, Cgl05G1757, Cgl06G1136, Cgl09G1480
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g06560, gene.Cymno05g05980, gene.Cymno07g00150
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g16680, gene.Thate02g01550, gene.Thate02g16200 ... gene.Thate09g02500
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1264, evm.TU.LG03.2569, evm.TU.LG09.723 ... evm.TU.LG11.1148
Plantaginaceae	Plantago ovata	3	Pov_00015840, Pov_00022553, Pov_00038152
Plumbaginaceae	Limonium bicolor	7	Lb1G00711, Lb1G05638, Lb1G06745, Lb3G18925, Lb3G18926 ... Lb3G19855, Lb6G31435
Poaceae	Echinochloa crus-galli	12	AH01.3839, AH02.1552, AH07.2025, AH09.894, BH01.4182 ... BH02.1617, BH07.1992, BH09.964, CH01.4468, CH02.1771, CH07.1843, CH09.1080
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0015580, gene-QOZ80_1BG0064400 ... gene-QOZ80_2AG0132690, gene-QOZ80_2BG0188080, gene-QOZ80_3AG0246010, gene-QOZ80_3BG0282130, gene-QOZ80_4AG0318670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0165830.1, HORVU.MOREX.r3.3HG0258530.2 ... HORVU.MOREX.r3.4HG0381060.1
Poaceae	Lolium multiflorum	3	gene-QYE76_022691, gene-QYE76_052828, gene-QYE76_068395
Poaceae	Oryza coarctata	7	Oco01G009530, Oco02G009880, Oco03G011470, Oco04G011900 ... Oco06G014510, Oco07G005160, Oco08G005130
Poaceae	Oryza sativa	4	LOC_Os01g22900.1, LOC_Os02g32730.1, LOC_Os03g20020.1 ... LOC_Os04g33490.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G373300, gene-BS78_04G150300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0107891, Pt_Chr0302846, Pt_Chr0302916, Pt_Chr0603594 ... Pt_Chr0705135
Poaceae	Sporobolus alterniflorus	12	Chr01G033190, Chr02G022680, Chr04G009780, Chr05G013580 ... Chr07G001940, Chr09G015340, Chr0G019710, Chr0G029250, Chr12G006360, Chr13G011260, Chr15G012220, Chr23G013690
Poaceae	Thinopyrum elongatum	4	Tel2E01G521100, Tel3E01G355600, Tel3E01G460800 ... Tel4E01G323900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG042400, gene_TRIDC2BG045520 ... gene_TRIDC3AG028020, gene_TRIDC3BG035130, gene_TRIDC4AG016560, gene_TRIDC4BG034250
Poaceae	Triticum aestivum	9	TraesCS2A02G292900.1, TraesCS2B02G309800.1 ... TraesCS2D02G291100.2, TraesCS3A02G195400.1, TraesCS3B02G232600.1, TraesCS3D02G200800.1, TraesCS4A02G124800.1, TraesCS4B02G179600.2, TraesCS4D02G181200.1
Poaceae	Zea mays	4	Zm00001eb015090_P005, Zm00001eb131170_P001 ... Zm00001eb181370_P001, Zm00001eb340670_P001
Poaceae	Zoysia japonica	6	nbis-gene-1804, nbis-gene-18903, nbis-gene-3483 ... nbis-gene-51026, nbis-gene-6466, nbis-gene-7753
Poaceae	Zoysia macrostachya	6	Zma_g10268, Zma_g1342, Zma_g16405, Zma_g21220, Zma_g3748 ... Zma_g7922
Portulacaceae	Portulaca oleracea	7	evm.TU.LG08.1481, evm.TU.LG18.1009, evm.TU.LG18.1536 ... evm.TU.LG19.351, evm.TU.LG20.344, evm.TU.LG20.865, evm.TU.LG22.373
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13390, gene.Posoc05g22710
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_13_RagTag.464, evm.TU.Scaffold_1_RagTag.47 ... evm.TU.Scaffold_2_RagTag.1266, evm.TU.Scaffold_6_RagTag.1222
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-16202, nbisL1-mrna-2865, nbisL1-mrna-2930 ... nbisL1-mrna-30642, nbisL1-mrna-3913, nbisL1-mrna-3969, nbisL1-mrna-8235
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13682, nbisL1-mrna-17305, nbisL1-mrna-3787 ... nbisL1-mrna-785
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-1053, nbisL1-mrna-18748, nbisL1-mrna-21033 ... nbisL1-mrna-5138
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000009l.464, evm.TU.utg000011l.785 ... evm.TU.utg000012l.31, evm.TU.utg000015l.241
Rhizophoraceae	Kandelia obovata	4	Maker00004980, Maker00008014, Maker00011349, Maker00015355
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12368, nbisL1-mrna-13515, nbisL1-mrna-4162 ... nbisL1-mrna-7928
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-22152, nbisL1-mrna-24676, nbisL1-mrna-4024 ... nbisL1-mrna-41, nbisL1-mrna-5473
Salicaceae	Populus euphratica	7	populus_peu06122, populus_peu06856, populus_peu08582 ... populus_peu13201, populus_peu13258, populus_peu15588, populus_peu19984
Solanaceae	Lycium barbarum	4	gene-LOC132598468, gene-LOC132600549, gene-LOC132612822 ... gene-LOC132626756
Solanaceae	Solanum pennellii	4	gene-LOC107004475, gene-LOC107004811, gene-LOC107008289 ... gene-LOC107009180
Tamaricaceae	Reaumuria soongarica	4	STRG.28396_chr04_+, STRG.32467_chr09_-, gene_4670, gene_6462
Tamaricaceae	Tamarix chinensis	3	TC01G1400, TC02G1116, TC02G3563
Zosteraceae	Zostera marina	3	Zosma01g36990.v3.1, Zosma03g17910.v3.1, Zosma04g24430.v3.1