Basic Information
Locus ID:
Ag6G02274
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 225910272 | 225915506 | + | Ag6G02274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 47,975.49 Da | 47.36 | 88.66 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11605 | Vacuolar protein sorting protein 36 Vps36 | 10 | 99 | 5.2E-12 | IPR021648 |
| Pfam | PF04157 | EAP30/Vps36 family | 174 | 399 | 1.5E-42 | IPR040608 |
| SUPERFAMILY | SSF50729 | PH domain-like | 4 | 117 | 4.51E-17 | - |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 303 | 414 | 2.18E-26 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 257 | 341 | 1.77E-26 | IPR036390 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 149 | 2.5E-16 | IPR011993 |
| Gene3D | G3DSA:1.10.10.10 | - | 264 | 341 | 9.1E-31 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 343 | 414 | 1.2E-18 | IPR036388 |
| Gene3D | G3DSA:6.10.140.260 | - | 189 | 263 | 4.7E-23 | - |
| ProSiteProfiles | PS51495 | GLUE domain profile. | 9 | 151 | 11.32617 | IPR021648 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04920.1 | EAP30/Vps36 family protein. | 0 |
| RefSeq | XP_017214958.1 | PREDICTED: vacuolar protein sorting-associated protein 36 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9FF81 | Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana OX=3702 GN=VPS36 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UYD7 | Vacuolar protein-sorting-associated protein 36 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023093 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.452549 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.328964 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.114426 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.396169 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.800858 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.397148 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.134004 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.02894 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.317713 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.110266 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.656286 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.638048 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.23192 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.292979 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.515365 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.863923 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.930576 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.08699 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.334475 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.798647 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.459563 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.210499 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.833153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.315736 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.70277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.467043 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.790766 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.510804 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.085475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.760324 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.215539 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.436943 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.778325 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.134897 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.334101 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.000918 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.788692 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.87346 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.28679 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.912744 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.796211 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 35.602036 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.036291 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.588093 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.45298 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.68515 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.097481 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.697728 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.039043 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.047533 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29913 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11458 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006619 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg188, Sbi_jg36360 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4399 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027508 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl25308, Sgl30489 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010954, gene:ENSEOMG00000028396 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013480, CQ.Regalona.r1.4BG0016020 |
| Apiaceae | Apium graveolens | 1 | Ag6G02274 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G005540, COCNU_12G005550 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3241.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G17971 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013568m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37880.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g055670.2N, BniB05g029460.2N, BniB05g029470.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1588 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1619 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g17760 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0696s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g12080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014740 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05655 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3645, BH02.3309, CH02.3929 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0037360, gene-QOZ80_1BG0087500 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0086170.1, HORVU.MOREX.r3.3HG0296270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055836 |
| Poaceae | Oryza coarctata | 2 | Oco01G023010, Oco02G023750 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g59800.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G313600, gene-BS78_09G064800, gene-BS78_K333100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101776, Pt_Chr0605586 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G018520, Chr05G026750, Chr08G023380, Chr08G023390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G539700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG048620, gene_TRIDC3BG054690 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G337500.1, TraesCS3B02G368700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb149970_P001, Zm00001eb369140_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31402 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11390 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1380, evm.TU.LG11.757 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1118 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6495 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3673 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21096 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.837 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016539 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11022 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13323 |
| Salicaceae | Populus euphratica | 2 | populus_peu06166, populus_peu19888 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645330 |
| Solanaceae | Solanum chilense | 1 | SOLCI001255300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008359 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24538_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2492 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32990.v3.1 |