halophFGD

Basic Information

Locus ID: Ag6G02231

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Elongation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	213812852	213815980	-	Ag6G02231

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.13	116,079.04 Da	44.06	89.62	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04096	eEF2_snRNP_like_C	903	981	3.98758E-36	-
CDD	cd16268	EF2_II	408	532	2.49163E-27	-
CDD	cd01681	aeEF2_snRNP_like_IV	618	907	5.27783E-34	-
CDD	cd01885	EF2	12	234	4.95454E-110	-
CDD	cd16261	EF2_snRNP_III	547	618	1.2305E-29	-
Pfam	PF00009	Elongation factor Tu GTP binding domain	10	252	1.9E-52	IPR000795
Pfam	PF03144	Elongation factor Tu domain 2	451	529	3.3E-8	IPR004161
Pfam	PF00679	Elongation factor G C-terminus	901	982	1.1E-15	IPR000640
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	7	359	5.49E-76	IPR027417
SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	621	902	1.06E-22	IPR020568
SUPERFAMILY	SSF54980	EF-G C-terminal domain-like	544	619	3.06E-16	IPR035647
SUPERFAMILY	SSF54980	EF-G C-terminal domain-like	903	1001	2.69E-22	IPR035647
SUPERFAMILY	SSF50447	Translation proteins	399	541	7.07E-24	IPR009000
Gene3D	G3DSA:3.40.50.300	-	5	241	2.2E-73	IPR027417
Gene3D	G3DSA:2.40.30.10	Translation factors	361	544	1.7E-40	-
Gene3D	G3DSA:3.30.70.240	-	899	1034	3.0E-31	-
Gene3D	G3DSA:3.30.70.870	Elongation Factor G (Translational Gtpase), domain 3	546	622	1.9E-24	-
Gene3D	G3DSA:3.30.230.10	-	644	897	1.7E-31	IPR014721
SMART	SM00838	EFG_C_a	900	989	2.0E-13	IPR000640
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	9	242	43.370132	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	95	106	3.2E-11	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	13	26	3.2E-11	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	79	89	3.2E-11	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	59	67	3.2E-11	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	131	140	3.2E-11	IPR000795

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K14536 (ribosome assembly protein 1 [EC:3.6.5.-])

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G22980.1	Ribosomal protein S5/Elongation factor G/III/V family protein.
RefSeq	XP_017230265.1	PREDICTED: elongation factor-like GTPase 1 [Daucus carota subsp. sativus]
Swiss-Prot	Q7Z2Z2	Elongation factor-like GTPase 1 OS=Homo sapiens OX=9606 GN=EFL1 PE=1 SV=2
TrEMBL	A0A166G3G6	Tr-type G domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001041 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.940376	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.143358	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	17.713936	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.095875	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.420158	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.16967	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.574474	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	21.073215	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.748793	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.584042	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.377346	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	23.548798	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	22.324064	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	18.156111	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.067747	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.203932	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.987276	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.927061	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.484806	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.875887	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.910896	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.234471	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	16.216257	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.586979	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.993724	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.132294	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.593632	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.618124	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.579793	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.91458		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.064301		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.891121		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	13.643326		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.420809		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.396917		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.12555		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.974628		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.918932		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.284035	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.427933	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.94006	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.79265	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.220146	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	47.345364	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	33.905949	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	22.977364	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	30.885204	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.512843	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.829186	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.086904	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg32730
Aizoaceae	Mesembryanthemum crystallinum	1	gene_6873
Amaranthaceae	Atriplex hortensis	1	Ah027760
Amaranthaceae	Beta vulgaris	1	BVRB_7g171440
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg1473, Sbi_jg35084
Amaranthaceae	Salicornia europaea	1	Seu_jg3269
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00003439
Amaranthaceae	Suaeda glauca	2	Sgl72699, Sgl76238
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000036862, gene:ENSEOMG00000037722
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0005160, CQ.Regalona.r1.9BG0000670
Anacardiaceae	Pistacia vera	1	pistato.v30073300
Apiaceae	Apium graveolens	1	Ag6G02231
Arecaceae	Cocos nucifera	1	COCNU_09G002380
Arecaceae	Phoenix dactylifera	1	gene-LOC103721162
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1856.V1.1, AsparagusV1_07.3351.V1.1 ... AsparagusV1_07.3817.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G18170
Brassicaceae	Arabidopsis thaliana	1	AT3G22980.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10019976m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g20670.v2.2
Brassicaceae	Brassica nigra	1	BniB01g039360.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1674
Casuarinaceae	Casuarina glauca	1	Cgl05G1668
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g00910
Dunaliellaceae	Dunaliella salina	3	Dusal.0214s00012.v1.0, Dusal.0938s00001.v1.0 ... Dusal.0938s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g36990
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11225, nbisL1-mrna-11226
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.592
Plantaginaceae	Plantago ovata	1	Pov_00003864
Plumbaginaceae	Limonium bicolor	1	Lb4G23501
Poaceae	Echinochloa crus-galli	1	CH07.1906
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2BG0188640, gene-QOZ80_3AG0223570 ... gene-QOZ80_3BG0268340
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0009760.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_020933, gene-QYE76_020989, gene-QYE76_059650 ... gene-QYE76_063309
Poaceae	Oryza coarctata	3	Oco03G012070, Oco05G019170, Oco06G020050
Poaceae	Oryza sativa	2	LOC_Os02g33850.1, LOC_Os03g44780.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G140900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0104563
Poaceae	Sporobolus alterniflorus	3	Chr01G009100, Chr04G025080, Chr12G028000
Poaceae	Thinopyrum elongatum	2	Tel1E01G103000, Tel5E01G591300
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG006430, gene_TRIDC1BG008190 ... gene_TRIDC5AG054240, gene_TRIDC5BG058230
Poaceae	Triticum aestivum	6	TraesCS1A02G048300.1, TraesCS1B02G062700.1.cds1 ... TraesCS1D02G049600.1.cds1, TraesCS5A02G370800.1.cds1, TraesCS5B02G373200.1.cds1, TraesCS5D02G380500.1.cds1
Poaceae	Zea mays	1	Zm00001eb052970_P001
Poaceae	Zoysia japonica	1	nbis-gene-20520
Poaceae	Zoysia macrostachya	1	Zma_g3162
Portulacaceae	Portulaca oleracea	2	evm.TU.LG05.1989, evm.TU.LG11.1559
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g00430
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.566
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-29570, nbisL1-mrna-29571, nbisL1-mrna-30505
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-11237
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15951
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000015l.124
Rhizophoraceae	Kandelia obovata	1	Maker00015828
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-18380, nbisL1-mrna-18415
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15227, nbisL1-mrna-22169
Salicaceae	Populus euphratica	2	populus_peu36801, populus_peu36802
Solanaceae	Lycium barbarum	1	gene-LOC132600672
Solanaceae	Solanum chilense	1	SOLCI003294400
Solanaceae	Solanum pennellii	1	gene-LOC107005113
Tamaricaceae	Reaumuria soongarica	1	gene_3344
Tamaricaceae	Tamarix chinensis	1	TC11G1277
Zosteraceae	Zostera marina	1	Zosma06g30510.v3.1