halophFGD

Basic Information

Locus ID: Ag6G02230

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	213798948	213808015	+	Ag6G02230

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.16	155,265.14 Da	49.05	85.12	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00225	Kinesin motor domain	84	414	6.7E-110	IPR001752
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	78	450	4.69E-119	IPR027417
Gene3D	G3DSA:3.40.850.10	Kinesin motor domain	72	427	4.1E-137	IPR036961
SMART	SM00129	kinesin_4	76	423	2.3E-159	IPR001752
ProSiteProfiles	PS50067	Kinesin motor domain profile.	78	415	122.42366	IPR001752
ProSitePatterns	PS00411	Kinesin motor domain signature.	311	322	-	IPR019821
PRINTS	PR00380	Kinesin heavy chain signature	365	386	2.7E-41	IPR001752
PRINTS	PR00380	Kinesin heavy chain signature	312	330	2.7E-41	IPR001752
PRINTS	PR00380	Kinesin heavy chain signature	150	171	2.7E-41	IPR001752
PRINTS	PR00380	Kinesin heavy chain signature	279	296	2.7E-41	IPR001752
MobiDBLite	mobidb-lite	consensus disorder prediction	734	755	-	-
Coils	Coil	Coil	1107	1162	-	-
Coils	Coil	Coil	1023	1043	-	-
Coils	Coil	Coil	1229	1256	-	-
Coils	Coil	Coil	1187	1221	-	-
Coils	Coil	Coil	422	456	-	-
Coils	Coil	Coil	698	732	-	-
Coils	Coil	Coil	1292	1312	-	-
Coils	Coil	Coil	564	584	-	-
Coils	Coil	Coil	844	899	-	-
Coils	Coil	Coil	787	814	-	-

Gene Ontology

Biological Process:

GO:0007018 (microtubule-based movement)

Molecular Function:

GO:0003777 (microtubule motor activity) GO:0005524 (ATP binding) GO:0008017 (microtubule binding)

KEGG Pathway

KO Term:

K10400 (kinesin family member 15)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G44050.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein.
RefSeq	XP_017229898.1	PREDICTED: phragmoplast orienting kinesin 2 [Daucus carota subsp. sativus]
Swiss-Prot	F4J1U4	Kinesin-like protein KIN-12E OS=Arabidopsis thaliana OX=3702 GN=KIN12E PE=3 SV=1
TrEMBL	A0A166G3F2	Kinesin motor domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001040 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.623438	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.184811	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.728547	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.631665	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.050698	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.533109	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.600943	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.241486	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	33.427521	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	30.164793	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	36.788586	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	26.814604	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	21.988207	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.770241	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.289082	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.646726	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.865314	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.399922	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.129973	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.158652	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.886149	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.878388	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.683153	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	10.330386	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.272624	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	3.988913	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.783887	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.160305	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.769422	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.02759		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.145708		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.132296		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.162201		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.047501		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.050119		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.279303		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.015295		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.842568	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.559665	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.202649	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.146866	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.370231	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.1364	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.646865	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.187287	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.591878	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.447444	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.290235	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.64595	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1050, jg12327, jg28708, jg36061
Aizoaceae	Mesembryanthemum crystallinum	3	gene_21585, gene_5744, gene_5745
Amaranthaceae	Atriplex hortensis	2	Ah010361, Ah027761
Amaranthaceae	Beta vulgaris	2	BVRB_7g171450, BVRB_9g218530
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1474, Sbi_jg26557, Sbi_jg34007, Sbi_jg35083 ... Sbi_jg39603, Sbi_jg39604
Amaranthaceae	Salicornia europaea	2	Seu_jg15082, Seu_jg3268
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003438, GOSA_00019691, GOSA_00019692
Amaranthaceae	Suaeda glauca	4	Sgl00036, Sgl05109, Sgl72698, Sgl76237
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000007002, gene:ENSEOMG00000018937 ... gene:ENSEOMG00000039830, gene:ENSEOMG00000043440, gene:ENSEOMG00000053043
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.7AG0005140, CQ.Regalona.r1.7AG0005150 ... CQ.Regalona.r1.7BG0008660, CQ.Regalona.r1.9AG0015780, CQ.Regalona.r1.9BG0000660
Anacardiaceae	Pistacia vera	5	pistato.v30055570, pistato.v30113250, pistato.v30187920 ... pistato.v30232340, pistato.v30287400
Apiaceae	Apium graveolens	4	Ag1G02040, Ag5G01775, Ag6G02230, Ag9G00142
Arecaceae	Cocos nucifera	4	COCNU_03G000010, COCNU_04G009820, COCNU_04G010440 ... COCNU_06G017700
Arecaceae	Phoenix dactylifera	3	gene-LOC103701143, gene-LOC103707297, gene-LOC103709188
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.1640.V1.1, AsparagusV1_07.1083.V1.1 ... AsparagusV1_07.3115.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G10302, Ftri15G09275, Ftri16G04182, Ftri17G01101
Brassicaceae	Arabidopsis thaliana	3	AT3G17360.1, AT3G19050.1, AT3G44050.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10010073m.g.v1.0, Thhalv10019870m.g.v1.0 ... Thhalv10019874m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g15530.v2.2, Sp3g17150.v2.2, Sp5g17250.v2.2
Brassicaceae	Brassica nigra	3	BniB01g045320.2N, BniB01g047410.2N, BniB08g056860.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq05G1531, Ceq07G1976, Ceq09G1410
Casuarinaceae	Casuarina glauca	3	Cgl05G1530, Cgl07G2172, Cgl09G1502
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g00190, gene.Cymno01g15360, gene.Cymno04g06760 ... gene.Cymno05g06170
Dunaliellaceae	Dunaliella salina	8	Dusal.0038s00038.v1.0, Dusal.0040s00027.v1.0 ... Dusal.0041s00037.v1.0, Dusal.0224s00019.v1.0, Dusal.0225s00005.v1.0, Dusal.0284s00013.v1.0, Dusal.0342s00004.v1.0, Dusal.0699s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g39880, gene.Thate04g14110, gene.Thate06g13200
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11921, nbisL1-mrna-444, nbisL1-mrna-5477
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG08.41, evm.TU.LG09.520, evm.TU.LG09.521 ... evm.TU.LG11.1122
Plantaginaceae	Plantago ovata	3	Pov_00015724, Pov_00026333, Pov_00035518
Plumbaginaceae	Limonium bicolor	4	Lb1G04325, Lb3G17181, Lb3G19277, Lb3G19281
Poaceae	Echinochloa crus-galli	11	AH03.3839, AH05.3873, BH01.716, BH03.4124, BH05.3978 ... BH06.2885, CH01.713, CH03.4399, CH03.4838, CH05.4192, Contig309.73
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0215980, gene-QOZ80_3BG0261250
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0120880.1, HORVU.MOREX.r3.5HG0437720.1 ... HORVU.MOREX.r3.5HG0438440.1, HORVU.MOREX.r3.5HG0510860.1
Poaceae	Lolium multiflorum	5	gene-QYE76_000502, gene-QYE76_000517, gene-QYE76_035819 ... gene-QYE76_039349, gene-QYE76_061813
Poaceae	Oryza coarctata	5	Oco05G023700, Oco06G024620, Oco13G013850, Oco14G014660 ... Oco24G009220
Poaceae	Oryza sativa	3	LOC_Os03g53920.1, LOC_Os07g44400.1, LOC_Os12g39980.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G080100, gene-BS78_02G366100 ... gene-BS78_08G123300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0107185, Pt_Chr0304831, Pt_Chr0704135, Pt_Chr0704142 ... Pt_Chr0704161
Poaceae	Sporobolus alterniflorus	8	Chr04G018200, Chr04G028640, Chr06G018820, Chr07G027600 ... Chr12G037590, Chr24G013970, Chr24G014160, Chr28G012770
Poaceae	Thinopyrum elongatum	5	Tel2E01G301100, Tel5E01G138600, Tel5E01G138700 ... Tel5E01G141300, Tel5E01G620200
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG018780, gene_TRIDC2BG022610 ... gene_TRIDC5AG010190, gene_TRIDC5AG010330, gene_TRIDC5AG056840, gene_TRIDC5BG011820, gene_TRIDC5BG012080, gene_TRIDC5BG060980
Poaceae	Triticum aestivum	10	TraesCS2A02G149500.1, TraesCS2B02G174600.1 ... TraesCS2D02G154600.1, TraesCS5A02G067300.1, TraesCS5A02G390000.1, TraesCS5B02G072900.1, TraesCS5B02G074200.1, TraesCS5B02G395000.1, TraesCS5D02G078500.1, TraesCS5D02G399800.1
Poaceae	Zea mays	4	Zm00001eb057370_P001, Zm00001eb135060_P001 ... Zm00001eb210340_P001, Zm00001eb328750_P001
Poaceae	Zoysia japonica	3	nbis-gene-15074, nbis-gene-263, nbis-gene-30461
Poaceae	Zoysia macrostachya	3	Zma_g26049, Zma_g473, Zma_g6938
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.1872, evm.TU.LG02.428, evm.TU.LG05.2228 ... evm.TU.LG07.1345, evm.TU.LG08.1886
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g12950, gene.Posoc03g00470, gene.Posoc03g28550
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.486, evm.TU.Scaffold_1_RagTag.2133 ... evm.TU.Scaffold_2_RagTag.275, evm.TU.Scaffold_3_RagTag.701
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-1267, nbisL1-mrna-24257, nbisL1-mrna-4922 ... nbisL1-mrna-5936
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12899, nbisL1-mrna-16941, nbisL1-mrna-18477
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-19741, nbisL1-mrna-3404, nbisL1-mrna-6384 ... nbisL1-mrna-6385, nbisL1-mrna-6386, nbisL1-mrna-6387
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000016l.189, evm.TU.utg000019l.791 ... evm.TU.utg000027l.268
Rhizophoraceae	Kandelia obovata	3	Maker00012574, Maker00016779, Maker00017901
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-18826, nbisL1-mrna-4749, nbisL1-mrna-5714
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11966, nbisL1-mrna-13135, nbisL1-mrna-14064 ... nbisL1-mrna-6109
Salicaceae	Populus euphratica	5	populus_peu08519, populus_peu08958, populus_peu08959 ... populus_peu20736, populus_peu36831
Solanaceae	Lycium barbarum	3	gene-LOC132599085, gene-LOC132600674, gene-LOC132626609
Solanaceae	Solanum chilense	4	SOLCI002697400, SOLCI003294100, SOLCI004338900 ... SOLCI004339000
Solanaceae	Solanum pennellii	3	gene-LOC107005003, gene-LOC107006540, gene-LOC107007729
Tamaricaceae	Reaumuria soongarica	3	MSTRG.11965_chr07_+, STRG.11368_chr02_-, gene_3022
Tamaricaceae	Tamarix chinensis	4	TC08G0528, TC08G0529, TC10G0544, TC11G1278
Zosteraceae	Zostera marina	3	Zosma03g17300.v3.1, Zosma03g18100.v3.1, Zosma05g33120.v3.1