Basic Information
Locus ID:
Ag6G02139
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein CHUP1, chloroplastic-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 187950851 | 187957952 | - | Ag6G02139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 48,242.75 Da | 52.55 | 85.47 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 18 | 52 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07120.1 | 0 | |
| RefSeq | XP_017232930.1 | PREDICTED: protein CHUP1, chloroplastic isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LMK4 | INCREASED PETAL GROWTH ANISOTROPY 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=IPGAL1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J5C659 | Protein CHUP1, chloroplastic OS=Nyssa sinensis OX=561372 GN=F0562_001095 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.0575 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.057017 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.635915 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.001245 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.950074 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.963146 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.032286 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.040949 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.350199 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.549227 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.082915 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.918949 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.588106 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.330612 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.913946 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.234764 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.551427 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.195139 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.497436 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.384538 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.934577 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.199449 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.027187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.168352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.135154 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.919965 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.691085 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.915002 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.507684 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.239403 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.387518 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.886603 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.260787 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.765418 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.483015 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.781526 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.284457 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.649042 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.013303 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.983529 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.909208 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.481605 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.58398 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.214018 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.841298 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.349736 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.85051 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.648855 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.963515 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25757 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031077, Ah037621 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207240 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2416 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24113 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025994 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78742, Sgl78760, Sgl81211 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000039298, gene:ENSEOMG00000051296 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005490, CQ.Regalona.r1.9BG0016660 |
| Apiaceae | Apium graveolens | 1 | Ag6G02139 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695774 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.271.V1.1, AsparagusV1_07.566.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA08323 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G07120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007909m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05870.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g002070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1848 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1905 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30955 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3978, BH01.4371, CH01.4611 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244380, gene-QOZ80_3BG0283780 |
| Poaceae | Oryza coarctata | 2 | Oco05G010720, Oco06G010960 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G388200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102430, Pt_Chr0102458 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032120, Chr04G008780, Chr07G002920, Chr12G007490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G344700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG033650 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111000.1, TraesCS4B02G193100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013540_P001, Zm00001eb396920_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1950 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1439 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.110, evm.TU.Scaffold_13_RagTag.950 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24688, nbisL1-mrna-30067 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15484, nbisL1-mrna-15677 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16312, nbisL1-mrna-19416 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.561, evm.TU.utg000027l.502 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017887 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4467, nbisL1-mrna-5492 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11644, nbisL1-mrna-20840 |
| Salicaceae | Populus euphratica | 2 | populus_peu01743, populus_peu36068 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29668_chr10_-, gene_14603 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2698, TC03G0065 |