halophFGD

Basic Information

Locus ID: Ag6G02109

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: 6-phosphofructo-2-kinase fructose-2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	177940072	177957005	-	Ag6G02109

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.30	105,576.82 Da	37.38	87.37	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16461	RING-H2_EL5_like	839	882	7.60748E-22	-
CDD	cd07067	HP_PGM_like	549	716	4.43798E-22	IPR013078
Pfam	PF01591	6-phosphofructo-2-kinase	330	546	3.0E-83	IPR013079
Pfam	PF13639	Ring finger domain	839	882	1.0E-11	IPR001841
Pfam	PF00300	Histidine phosphatase superfamily (branch 1)	549	716	8.0E-36	IPR013078
SUPERFAMILY	SSF57850	RING/U-box	834	886	1.24E-19	-
SUPERFAMILY	SSF49452	Starch-binding domain-like	24	113	6.62E-15	IPR013784
SUPERFAMILY	SSF53254	Phosphoglycerate mutase-like	549	716	3.0E-46	IPR029033
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	339	547	5.01E-33	IPR027417
Gene3D	G3DSA:2.60.40.10	Immunoglobulins	25	119	1.4E-8	IPR013783
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	819	889	8.7E-20	IPR013083
Gene3D	G3DSA:3.40.50.1240	-	545	723	7.3E-56	IPR029033
Gene3D	G3DSA:3.40.50.300	-	337	544	3.2E-78	IPR027417
SMART	SM00855	PGAM_5	548	699	5.2E-16	IPR013078
SMART	SM01065	CBM_20_2	26	118	1.3E-6	IPR002044
SMART	SM00184	ring_2	840	881	3.6E-6	IPR001841
ProSiteProfiles	PS51166	CBM20 (carbohydrate binding type-20) domain profile.	21	128	16.024782	IPR002044
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	840	882	12.769585	IPR001841
ProSitePatterns	PS00175	Phosphoglycerate mutase family phosphohistidine signature.	551	560	-	IPR001345
PRINTS	PR00991	6-phosphofructo-2-kinase family signature	527	548	1.1E-27	IPR003094
PRINTS	PR00991	6-phosphofructo-2-kinase family signature	448	462	1.1E-27	IPR003094
PRINTS	PR00991	6-phosphofructo-2-kinase family signature	423	437	1.1E-27	IPR003094
PRINTS	PR00991	6-phosphofructo-2-kinase family signature	549	571	1.1E-27	IPR003094
PRINTS	PR00991	6-phosphofructo-2-kinase family signature	629	645	1.1E-27	IPR003094

Gene Ontology

Biological Process:

GO:0006000 (fructose metabolic process) GO:0006003 (fructose 2,6-bisphosphate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0003873 (6-phosphofructo-2-kinase activity) GO:0005524 (ATP binding) GO:0030246 (carbohydrate binding) GO:2001070 (starch binding)

KEGG Pathway

KO Term:

K01103 (6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3 [EC:2.7.1.105 3.1.3.46])

Pathway:

ko00051 (Fructose and mannose metabolism) map00051 (Fructose and mannose metabolism) ko04066 (HIF-1 signaling pathway) map04066 (HIF-1 signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway)

Reaction:

R02731 (beta-D-Fructose 2,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G07110.1	fructose-2,6-bisphosphatase. Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.
RefSeq	XP_017236005.1	PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9MB58	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana OX=3702 GN=FKFBP PE=1 SV=1
TrEMBL	A0A6A6L8E3	CBM20 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_010298 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.198164	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.835007	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.290268	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.491162	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.802451	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.282234	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	9.350305	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.806894	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	37.58913	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	38.157997	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	38.972134	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	35.761818	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	37.661549	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	31.589451	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	17.706377	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.577976	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.45505	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	42.874546	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	36.008198	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	27.418049	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	33.049976	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.908955	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.170074	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	19.640566	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	16.676151	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	39.572659	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	30.417976	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	38.275879	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	35.334957	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	22.446182		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	57.992199		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	34.914242		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.848142		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.353736		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.331721		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.615372		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.323446		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.577051		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	70.96875	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	74.862564	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	130.90477	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.505686	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.046146	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.629143	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	31.752552	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.058399	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	24.97892	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	24.199741	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	26.203817	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	22.513039	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg16664, jg38019
Aizoaceae	Mesembryanthemum crystallinum	1	gene_20914
Amaranthaceae	Atriplex hortensis	1	Ah037618
Amaranthaceae	Beta vulgaris	1	BVRB_9g207270
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg2413, Sbi_jg59853
Amaranthaceae	Salicornia europaea	1	Seu_jg24112
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00025999
Amaranthaceae	Suaeda glauca	4	Sgl78739, Sgl78740, Sgl78758, Sgl81209
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000037643, gene:ENSEOMG00000052425
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.9AG0005510, CQ.Regalona.r1.9BG0016640
Anacardiaceae	Pistacia vera	2	pistato.v30061160, pistato.v30064930
Apiaceae	Apium graveolens	1	Ag6G02109
Arecaceae	Cocos nucifera	1	COCNU_04G013650
Arecaceae	Phoenix dactylifera	1	gene-LOC103710391
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.567.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G17156, Ftri12G16236
Brassicaceae	Arabidopsis thaliana	1	AT1G07110.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10006901m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g05820.v2.2, Sp1g05830.v2.2
Brassicaceae	Brassica nigra	3	BniB02g003210.2N, BniB03g002060.2N, BniB06g043660.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1847
Casuarinaceae	Casuarina glauca	1	Cgl08G1904
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g19940
Dunaliellaceae	Dunaliella salina	2	Dusal.0004s00049.v1.0, Dusal.0348s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g01430
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG09.1064
Plantaginaceae	Plantago ovata	1	Pov_00016324
Plumbaginaceae	Limonium bicolor	3	Lb4G21603, Lb4G21626, Lb6G30953
Poaceae	Echinochloa crus-galli	6	AH01.3977, AH05.1088, BH01.4370, BH05.1135, CH01.4610 ... CH05.1284
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0244430, gene-QOZ80_3BG0283600 ... gene-QOZ80_5AG0403680, gene-QOZ80_5BG0452070
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0025720.1, HORVU.MOREX.r3.4HG0384510.1
Poaceae	Lolium multiflorum	1	gene-QYE76_016545
Poaceae	Oryza coarctata	4	Oco05G010730, Oco06G010970, Oco09G003110, Oco10G003080
Poaceae	Oryza sativa	2	LOC_Os03g18310.1, LOC_Os05g07130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G388100, gene-BS78_09G063900, gene-BS78_K199000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102431, Pt_Chr0102459, Pt_Chr0203636, Pt_Chr0501764
Poaceae	Sporobolus alterniflorus	5	Chr01G032130, Chr04G008790, Chr07G002880, Chr18G000410 ... Chr22G014530
Poaceae	Thinopyrum elongatum	2	Tel1E01G193900, Tel4E01G344600
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG014720, gene_TRIDC1BG018840 ... gene_TRIDC4AG015330, gene_TRIDC4BG033640
Poaceae	Triticum aestivum	6	TraesCS1A02G110900.1, TraesCS1B02G129000.1 ... TraesCS1D02G112300.1, TraesCS4A02G111100.1, TraesCS4B02G193000.1, TraesCS4D02G194000.1
Poaceae	Zea mays	2	Zm00001eb013550_P001, Zm00001eb282250_P001
Poaceae	Zoysia japonica	3	nbis-gene-23499, nbis-gene-3606, nbis-gene-55915
Poaceae	Zoysia macrostachya	2	Zma_g26487, Zma_g3830
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2178, evm.TU.LG16.1130, evm.TU.LG20.1421 ... evm.TU.LG23.414
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g03270
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60353.1, evm.TU.60354.1, evm.TU.60354.2
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-30066
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-15678
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16314
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000015l.562
Rhizophoraceae	Kandelia obovata	1	Maker00015731
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4468
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20839
Salicaceae	Populus euphratica	3	populus_peu01740, populus_peu01742, populus_peu36070
Solanaceae	Lycium barbarum	1	gene-LOC132606356
Solanaceae	Solanum chilense	1	SOLCI002069300
Solanaceae	Solanum pennellii	1	gene-LOC107023158
Tamaricaceae	Reaumuria soongarica	1	gene_110
Tamaricaceae	Tamarix chinensis	1	TC03G0062
Zosteraceae	Zostera marina	2	Zosma01g17220.v3.1, Zosma04g25590.v3.1