Basic Information
Locus ID:
Ag6G02108
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
inactive serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 177868968 | 177873698 | + | Ag6G02108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 20,642.19 Da | 43.35 | 89.19 | -0.16 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40730.1 | Protein kinase family protein with ARM repeat domain. | 0 |
| RefSeq | XP_028062837.1 | probable inactive serine/threonine-protein kinase scy1 isoform X2 [Camellia sinensis] | 0 |
| TrEMBL | A0A438J2P7 | N-terminal kinase-like protein OS=Vitis vinifera OX=29760 GN=scyl1_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.231573 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.948451 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.869949 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.361019 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.509432 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.251484 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.891129 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.701239 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.400837 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.518182 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.557437 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.300567 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.422701 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.022574 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.516867 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.239389 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.28329 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.333237 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.968144 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.542459 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.30393 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.040727 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.090007 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.306078 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.629805 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.391774 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.141679 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.836311 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.514485 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.223035 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.384446 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.688014 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.086079 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.813926 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.339347 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.337757 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.788357 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.921406 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.69545 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.934603 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.388308 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.323489 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.401877 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.125208 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.009807 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.222199 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14185, jg187, jg2490 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6288 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033292 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59629, Sbi_jg63009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23877 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025938, GOSA_00027415 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03108, Sgl08230, Sgl68709 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015561, gene:ENSEOMG00000020685 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008360, CQ.Regalona.r1.2BG0009460 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178150 |
| Apiaceae | Apium graveolens | 4 | Ag11G04116, Ag6G02106, Ag6G02107, Ag6G02108 |
| Arecaceae | Cocos nucifera | 3 | COCNU_16G005860, scaffold036382G000020 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702143, gene-LOC103722166 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1621.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G02128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016269m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23040.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g004680.2N, BniB06g000270.2N, BniB08g026340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0587 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0691 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g01930 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0206s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8162, nbisL1-mrna-8163 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1683 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021617 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23687 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3688, BH02.3269, CH02.3976 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0037980, gene-QOZ80_1BG0087980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055698 |
| Poaceae | Oryza coarctata | 2 | Oco01G023410, Oco02G024170 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g60440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G317800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601809 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G006240, Chr03G018860, Chr05G027130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G549000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049440, gene_TRIDC3BG055710 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G342800.1, TraesCS3B02G375000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb149610_P003, Zm00001eb368920_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31445 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11418 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.784, evm.TU.LG11.1716, evm.TU.LG12.942 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g08560, gene.Posoc04g09950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.303 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14117 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12667 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14263 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.174 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010010 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-425 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18911 |
| Salicaceae | Populus euphratica | 2 | populus_peu16355, populus_peu19148 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132611858, gene-LOC132640446 |
| Solanaceae | Solanum chilense | 2 | SOLCI002951500, SOLCI006470100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020541, gene-LOC107023759 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5334 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2385 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18080.v3.1 |