Basic Information
Locus ID:
Ag6G02105
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DUF1771
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 176866068 | 176875141 | - | Ag6G02105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 55,620.59 Da | 37.89 | 67.17 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08590 | Domain of unknown function (DUF1771) | 347 | 410 | 9.4E-18 | IPR013899 |
| SUPERFAMILY | SSF160443 | SMR domain-like | 418 | 492 | 4.05E-14 | IPR036063 |
| Gene3D | G3DSA:3.30.1370.110 | - | 394 | 493 | 7.4E-20 | - |
| SMART | SM00463 | SMR_2 | 416 | 493 | 1.1E-14 | IPR002625 |
| SMART | SM01162 | DUF1771_2 | 346 | 411 | 1.9E-20 | IPR013899 |
| ProSiteProfiles | PS50828 | Smr domain profile. | 419 | 493 | 15.047481 | IPR002625 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 30 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58720.1 | smr (Small MutS Related) domain-containing protein. | 0 |
| RefSeq | XP_017233872.1 | PREDICTED: SMR domain-containing protein At5g58720 [Daucus carota subsp. sativus] | 0 |
| O65573 | SMR domain-containing protein At5g58720 OS=Arabidopsis thaliana OX=3702 GN=PIPC PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XHL7 | Smr domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.293049 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.559584 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 21.816454 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.057131 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.821192 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.141647 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.340866 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.100605 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.114189 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 42.664566 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 48.1563 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.826817 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.854465 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.061455 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.984335 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.373076 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.401832 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.367938 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.033646 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.843132 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.921722 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.553654 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.800846 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.82847 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.387758 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.901302 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.31495 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.596399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.423708 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.572494 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.970284 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.330232 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.151351 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.607214 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.958115 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.315137 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.777164 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.305485 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.799767 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.240617 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.84781 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 29.499121 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 34.951057 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 84.636978 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 84.354416 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.794605 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 52.434959 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.536045 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.715916 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 40.951538 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5789 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1569, Sbi_jg34973 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3176 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003362 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21287, Sgl26629, Sgl72786, Sgl76325 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005755, gene:ENSEOMG00000035512 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004300, CQ.Regalona.r1.9BG0001370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30061470 |
| Apiaceae | Apium graveolens | 1 | Ag6G02105 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710887 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19608 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013268m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g20410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g038160.2N, BniB05g038170.2N, BniB08g012980.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1880 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1935 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g05040 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0257s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1095 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016315 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19171 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.136, BH02.118, CH02.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0001250, gene-QOZ80_1BG0049700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051525 |
| Poaceae | Oryza coarctata | 2 | Oco01G005500, Oco02G005580 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G010200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204918, Pt_Chr0205085 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G017160, Chr21G015990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G269800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020160, gene_TRIDC3BG030440 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G150300.2, TraesCS3B02G177300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb119510_P001, Zm00001eb126060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24305 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9531 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1824, evm.TU.LG14.51 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.925 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30092 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15665 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16291 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.548 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015844 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4452 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20858 |
| Salicaceae | Populus euphratica | 1 | populus_peu35804 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605804 |
| Solanaceae | Solanum chilense | 1 | SOLCI006106400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023358 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9404_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1196 |