halophFGD

Basic Information

Locus ID: Ag6G02092

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: UBA1

Description: Belongs to the ubiquitin-activating E1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	172278086	172287050	+	Ag6G02092

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.14	120,622.35 Da	33.41	85.14	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01491	Ube1_repeat1	85	470	8.8018E-145	-
CDD	cd01490	Ube1_repeat2	503	1041	0.0	-
Pfam	PF16190	Ubiquitin-activating enzyme E1 FCCH domain	261	331	8.0E-26	IPR032418
Pfam	PF09358	Ubiquitin fold domain	994	1083	2.8E-22	IPR018965
Pfam	PF00899	ThiF family	87	461	1.9E-27	IPR000594
Pfam	PF16191	Ubiquitin-activating enzyme E1 four-helix bundle	332	401	1.3E-23	IPR032420
Pfam	PF00899	ThiF family	483	981	1.8E-72	IPR000594
Pfam	PF10585	Ubiquitin-activating enzyme active site	670	923	9.7E-85	IPR019572
SUPERFAMILY	SSF69572	Activating enzymes of the ubiquitin-like proteins	80	467	4.84E-96	IPR035985
SUPERFAMILY	SSF69572	Activating enzymes of the ubiquitin-like proteins	477	978	1.83E-129	IPR035985
Gene3D	G3DSA:1.10.10.2660	-	655	930	4.4E-193	IPR042063
Gene3D	G3DSA:3.40.50.12550	-	205	493	1.5E-111	-
Gene3D	G3DSA:3.10.290.60	-	996	1086	1.4E-20	IPR038252
Gene3D	G3DSA:3.40.50.720	-	503	981	4.4E-193	-
Gene3D	G3DSA:2.40.30.180	-	248	329	1.5E-111	IPR042302
Gene3D	G3DSA:3.50.50.80	-	76	194	8.5E-36	IPR042449
SMART	SM00985	UBA_e1_C_a_2	961	1083	3.1E-49	IPR018965
TIGRFAM	TIGR01408	Ube1: ubiquitin-activating enzyme E1	80	1088	0.0	IPR018075
ProSitePatterns	PS00865	Ubiquitin-activating enzyme active site.	662	670	-	IPR033127
ProSitePatterns	PS00536	Ubiquitin-activating enzyme signature 1.	445	453	-	IPR018074
PRINTS	PR01849	Ubiquitin-activating enzyme E1 signature	222	249	7.2E-66	IPR000011
PRINTS	PR01849	Ubiquitin-activating enzyme E1 signature	731	758	7.2E-66	IPR000011
PRINTS	PR01849	Ubiquitin-activating enzyme E1 signature	530	553	7.2E-66	IPR000011
PRINTS	PR01849	Ubiquitin-activating enzyme E1 signature	577	602	7.2E-66	IPR000011
PRINTS	PR01849	Ubiquitin-activating enzyme E1 signature	107	131	7.2E-66	IPR000011

Gene Ontology

Biological Process:

GO:0036211 (protein modification process)

Molecular Function:

GO:0008641 (ubiquitin-like modifier activating enzyme activity)

KEGG Pathway

KO Term:

K03178 (ubiquitin-activating enzyme E1 [EC:6.2.1.45])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G30110.1	ubiquitin-activating enzyme 1. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling.
RefSeq	XP_017235869.1	PREDICTED: ubiquitin-activating enzyme E1 1 [Daucus carota subsp. sativus]
Swiss-Prot	P93028	Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana OX=3702 GN=UBA1 PE=1 SV=1
TrEMBL	A0A166EG44	E1 ubiquitin-activating enzyme OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007353 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	36.735531	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	25.793591	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.612371	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.058346	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	25.625502	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	27.296429	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	25.232382	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	25.847904	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.899288	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	42.298363	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	43.238647	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	42.109997	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	42.824978	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	35.497211	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.378909	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.43722	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	12.345475	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.488396	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.830294	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.787234	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	19.447786	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.817358	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	25.357979	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.930532	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	18.314339	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.113134	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.117905	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	16.158197	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	21.097084	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.46171		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.078485		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.645554		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.2799		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	18.970905		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	18.041143		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	15.644895		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.190846		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.75659		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	17.140324	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.285978	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.460998	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.866872	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.201176	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.527243	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	19.849888	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.375499	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.881184	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.388248	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.481855	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.95442	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14748, jg16676, jg3235
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2282, gene_7071
Amaranthaceae	Atriplex hortensis	1	Ah003270
Amaranthaceae	Beta vulgaris	2	BVRB_5g103160, BVRB_7g175340
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg26851, Sbi_jg33720, Sbi_jg4810, Sbi_jg7273
Amaranthaceae	Salicornia europaea	2	Seu_jg12737, Seu_jg8409
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001454, GOSA_00003050
Amaranthaceae	Suaeda glauca	4	Sgl51660, Sgl56970, Sgl73122, Sgl76669
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000004770, gene:ENSEOMG00000005226 ... gene:ENSEOMG00000021514, gene:ENSEOMG00000024113, gene:ENSEOMG00000037567, gene:ENSEOMG00000037789
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0010540, CQ.Regalona.r1.5BG0011060 ... CQ.Regalona.r1.7AG0001570, CQ.Regalona.r1.9BG0004130
Anacardiaceae	Pistacia vera	3	pistato.v30060990, pistato.v30063850, pistato.v30267720
Apiaceae	Apium graveolens	4	Ag10G01733, Ag11G04113, Ag6G02092, Ag8G00060
Arecaceae	Cocos nucifera	3	COCNU_04G003580, COCNU_16G006260, scaffold034219G000090
Arecaceae	Phoenix dactylifera	3	gene-LOC103706727, gene-LOC103718056, gene-LOC103722785
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.581.V1.1, AsparagusV1_08.3400.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G02568, Ftri9G20158, Ftri9G32358
Brassicaceae	Arabidopsis thaliana	2	AT2G30110.1, AT5G06460.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012525m.g.v1.0, Thhalv10016166m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g12690.v2.2, Sp6g36400.v2.2
Brassicaceae	Brassica nigra	4	BniB01g013990.2N, BniB02g054350.2N, BniB06g019220.2N ... BniB08g018690.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq08G0977, Ceq08G1834
Casuarinaceae	Casuarina glauca	2	Cgl08G0996, Cgl08G1892
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g05600, gene.Cymno14g10230
Dunaliellaceae	Dunaliella salina	1	Dusal.0257s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g01680, gene.Thate07g00110
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG09.1049
Plantaginaceae	Plantago ovata	2	Pov_00002679, Pov_00016342
Plumbaginaceae	Limonium bicolor	4	Lb2G10679, Lb2G14805, Lb7G33969, Lb7G33975
Poaceae	Echinochloa crus-galli	11	AH01.3970, AH03.4141, AH04.28, AH05.106, BH01.4366, BH04.35 ... BH03.4488, CH01.4603, CH01.4605, CH04.35, CH07.28
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_3AG0244480, gene-QOZ80_3BG0283550 ... gene-QOZ80_5AG0378620, gene-QOZ80_5BG0425660, gene-QOZ80_7AG0582740, gene-QOZ80_7BG0613870, gene-QOZ80_9AG0672030, gene-QOZ80_9BG0695560
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0108460.1, HORVU.MOREX.r3.4HG0354620.1 ... HORVU.MOREX.r3.4HG0384380.1, HORVU.MOREX.r3.5HG0465550.1
Poaceae	Lolium multiflorum	6	gene-QYE76_008094, gene-QYE76_037530, gene-QYE76_038560 ... gene-QYE76_065215, gene-QYE76_065376, gene-QYE76_068728
Poaceae	Oryza coarctata	3	Oco05G010790, Oco22G000160, Ocoptg000061lG000260
Poaceae	Oryza sativa	4	LOC_Os03g18380.3, LOC_Os07g49230.1, LOC_Os11g01510.2 ... LOC_Os12g01520.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G399900, gene-BS78_04G000800, gene-BS78_K163100 ... gene-BS78_05G004500
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0102436, Pt_Chr0102467, Pt_Chr0103580, Pt_Chr0103625 ... Pt_Chr0305311, Pt_Chr0705224
Poaceae	Sporobolus alterniflorus	11	Chr04G008850, Chr04G020750, Chr06G022420, Chr07G002820 ... Chr07G022430, Chr16G007810, Chr17G007110, Chr19G011340, Chr24G011750, Chr27G004790, Chr28G013690
Poaceae	Thinopyrum elongatum	5	Tel2E01G195400, Tel3E01G880400, Tel4E01G212500 ... Tel4E01G343300, Tel5E01G263600
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG010040, gene_TRIDC2BG011990 ... gene_TRIDC4AG015410, gene_TRIDC4AG029030, gene_TRIDC4BG021260, gene_TRIDC4BG033530, gene_TRIDC5AG025460, gene_TRIDC5BG026620
Poaceae	Triticum aestivum	12	TraesCS2A02G088900.3, TraesCS2B02G104300.1 ... TraesCS2D02G086700.2, TraesCS4A02G111700.1, TraesCS4A02G180800.1, TraesCS4B02G137100.1, TraesCS4B02G192100.2, TraesCS4D02G131600.1, TraesCS4D02G193400.2, TraesCS5A02G152600.2, TraesCS5B02G151300.1, TraesCS5D02G157800.1
Poaceae	Zea mays	5	Zm00001eb013620_P001, Zm00001eb094220_P001 ... Zm00001eb195000_P001, Zm00001eb331520_P002, Zm00001eb404860_P001
Poaceae	Zoysia japonica	4	nbis-gene-1945, nbis-gene-22, nbis-gene-25843 ... nbis-gene-26953
Poaceae	Zoysia macrostachya	3	Zma_g1437, Zma_g18326, Zma_g24594
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.2818, evm.TU.LG16.1653, evm.TU.LG16.839 ... evm.TU.LG18.522, evm.TU.LG26.14, evm.TU.LG26.515
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g34220, gene.Posoc06g21210
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.94, evm.TU.Scaffold_13_RagTag.959 ... evm.TU.Scaffold_1_RagTag.1852
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24703, nbisL1-mrna-30055, nbisL1-mrna-5615
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1362, nbisL1-mrna-15498, nbisL1-mrna-15689
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16326, nbisL1-mrna-19402, nbisL1-mrna-3674
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000015l.570, evm.TU.utg000016l.718 ... evm.TU.utg000027l.512
Rhizophoraceae	Kandelia obovata	3	Maker00015802, Maker00017146, Maker00017957
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-4475, nbisL1-mrna-4933, nbisL1-mrna-5484
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11632, nbisL1-mrna-13788, nbisL1-mrna-20828
Salicaceae	Populus euphratica	2	populus_peu36087, populus_peu36091
Solanaceae	Lycium barbarum	2	gene-LOC132605789, gene-LOC132630911
Solanaceae	Solanum chilense	2	SOLCI001038100, SOLCI004301700
Solanaceae	Solanum pennellii	2	gene-LOC107022994, gene-LOC107031036
Tamaricaceae	Reaumuria soongarica	2	gene_13213, gene_3684
Tamaricaceae	Tamarix chinensis	3	TC05G2777, TC11G0017, TC11G2343
Zosteraceae	Zostera marina	1	Zosma03g19660.v3.1