Basic Information
Locus ID:
Ag6G02081
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 168579554 | 168582985 | - | Ag6G02081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 64,636.10 Da | 45.72 | 86.63 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 342 | 571 | 1.8E-40 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 311 | 572 | 1.16E-51 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 315 | 578 | 7.4E-53 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 322 | 577 | 26.01152 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 281 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58520.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017231045.1 | PREDICTED: serine/threonine-protein kinase STY46 isoform X2 [Daucus carota subsp. sativus] | 0 |
| F4JTP5 | Serine/threonine-protein kinase STY46 OS=Arabidopsis thaliana OX=3702 GN=STY46 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166EG44 | E1 ubiquitin-activating enzyme OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007353 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.309017 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.110893 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.893989 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.940002 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.950489 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.095364 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.052392 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.472907 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.757542 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.33374 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.517963 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.51025 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.078255 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.070705 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.948324 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.883356 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.565749 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.523237 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.648717 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.730881 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.057299 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.912381 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.744665 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.607948 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.230487 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.715656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.639665 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.599491 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.529593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.73684 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.426021 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.583954 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.536697 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.868281 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.028474 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.879006 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.384724 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.99358 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.150597 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.274703 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.624225 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.878598 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.668857 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.310484 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.854733 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.941708 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.478706 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.469681 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.150355 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.28292 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16675 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7070 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028163 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26850, Sbi_jg33721 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8410 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003049 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73123, Sgl76670 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000039129, gene:ENSEOMG00000039784 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001580, CQ.Regalona.r1.9BG0004110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30060980, pistato.v30063830 |
| Apiaceae | Apium graveolens | 1 | Ag6G02081 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710336 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.588.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G29504 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G07140.1, AT5G58520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013017m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g20210.v2.2, Sp6g35760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g053740.2N, BniB08g013120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1833 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1891 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18290 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6542, nbisL1-mrna-9927 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1048 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016309, Pov_00016339 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3968, BH01.4364, CH01.4597 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244500, gene-QOZ80_3BG0283530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384360.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_068687, gene-QYE76_068733 |
| Poaceae | Oryza coarctata | 2 | Oco05G010820, Oco06G011060 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G387200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102438, Pt_Chr0102470 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032190, Chr04G008870, Chr07G002800, Chr12G007430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G342900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015430, gene_TRIDC4BG033500 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111900.1, TraesCS4B02G192000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013650_P002, Zm00001eb396880_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3601 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3825 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1654, evm.TU.LG26.13 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37630 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24704, nbisL1-mrna-30054 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15690 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16327 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015407 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4476 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20827 |
| Salicaceae | Populus euphratica | 2 | populus_peu01722, populus_peu36092 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606391 |
| Solanaceae | Solanum chilense | 1 | SOLCI002069900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021737 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3685 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2342 |