halophFGD

Basic Information

Locus ID: Ag6G02055

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	159024827	159034087	+	Ag6G02055

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.56	35,825.28 Da	45.75	66.69	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd03829	Sina	166	294	4.34785E-67	-
CDD	cd16571	RING-HC_SIAHs	50	88	6.38455E-13	-
Pfam	PF03145	Seven in absentia protein family	94	293	5.7E-80	IPR018121
SUPERFAMILY	SSF57850	RING/U-box	44	91	8.97E-6	-
SUPERFAMILY	SSF49599	TRAF domain-like	105	297	1.05E-48	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	46	94	9.5E-6	IPR013083
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	158	293	1.2E-39	IPR008974
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	100	157	2.1E-16	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	52	88	9.30263	IPR001841
ProSiteProfiles	PS51081	Zinc finger SIAH-type profile.	105	165	13.963663	IPR013010

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0007275 (multicellular organism development)

Molecular Function:

GO:0005515 (protein binding) GO:0008270 (zinc ion binding)

Cellular Component:

GO:0005737 (cytoplasm)

KEGG Pathway

KO Term:

K04506 (E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61790.1	Protein with RING/U-box and TRAF-like domains.
RefSeq	XP_017215834.1	PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8S3N1	E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2
TrEMBL	A0A7J0E4W1	RING-type E3 ubiquitin transferase OS=Actinidia rufa OX=165716 GN=Acr_01g0013330 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	22.995329	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.80521	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.145885	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.144651	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.553497	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.640712	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.97847	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.357555	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.794146	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	18.533918	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.637411	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.452389	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.428297	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.183537	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.173313	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.809769	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.116375	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.559939	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.128881	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.943714	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.699125	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	22.843695	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	23.205286	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	26.094608	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.21986	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.861089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.084322	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.126181	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	16.477375	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.561716		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.189658		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.256707		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.995998		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.84316		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.388138		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.363155		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.08496		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.419756		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.25939	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.710938	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.17036	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.58302	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.111057	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.918339	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	19.657637	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.946335	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.918306	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.790562	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.957775	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.400267	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg1546, jg15980, jg2010, jg2186, jg28982, jg29459, jg29883 ... jg33929, jg36129, jg38135
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12056, gene_2238, gene_23536, gene_3317
Amaranthaceae	Atriplex hortensis	5	Ah003896, Ah016673, Ah018616, Ah022847, Ah032403
Amaranthaceae	Beta vulgaris	4	BVRB_1g003000, BVRB_2g041370, BVRB_3g051920, BVRB_5g098610
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg15074, Sbi_jg24061, Sbi_jg29953, Sbi_jg3934 ... Sbi_jg43416, Sbi_jg49156, Sbi_jg55885, Sbi_jg7904
Amaranthaceae	Salicornia europaea	4	Seu_jg12137, Seu_jg18484, Seu_jg26386, Seu_jg6089
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000592, GOSA_00004246, GOSA_00010667, GOSA_00020076
Amaranthaceae	Suaeda glauca	9	Sgl01327, Sgl06411, Sgl10900, Sgl16254, Sgl16291, Sgl52251 ... Sgl57504, Sgl66271, Sgl70589
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000001476, gene:ENSEOMG00000006778 ... gene:ENSEOMG00000012946, gene:ENSEOMG00000015828, gene:ENSEOMG00000019440, gene:ENSEOMG00000019668, gene:ENSEOMG00000020473, gene:ENSEOMG00000023578, gene:ENSEOMG00000028868, gene:ENSEOMG00000032937, gene:ENSEOMG00000043369, gene:ENSEOMG00000047530, gene:ENSEOMG00000049644
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0002250, CQ.Regalona.r1.2BG0005840 ... CQ.Regalona.r1.2BG0026280, CQ.Regalona.r1.3BG0005230, CQ.Regalona.r1.5AG0005660, CQ.Regalona.r1.5BG0005950
Anacardiaceae	Pistacia vera	6	pistato.v30005800, pistato.v30054310, pistato.v30164590 ... pistato.v30165060, pistato.v30166020, pistato.v30278480
Apiaceae	Apium graveolens	3	Ag2G02097, Ag5G00987, Ag6G02055
Arecaceae	Cocos nucifera	8	COCNU_02G004090, COCNU_03G003470, COCNU_03G011420 ... COCNU_04G007070, COCNU_06G005070, COCNU_08G005570, COCNU_12G004580, COCNU_14G003300
Arecaceae	Phoenix dactylifera	11	gene-LOC103696810, gene-LOC103702515, gene-LOC103705037 ... gene-LOC103705078, gene-LOC103707368, gene-LOC103708627, gene-LOC103711185, gene-LOC103714207, gene-LOC103719820, gene-LOC103720723, gene-LOC103724054
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.502.V1.1, AsparagusV1_04.926.V1.1 ... AsparagusV1_05.1986.V1.1, AsparagusV1_05.75.V1.1, AsparagusV1_07.1619.V1.1
Asteraceae	Flaveria trinervia	9	Ftri11G33540, Ftri12G25936, Ftri12G27276, Ftri15G19230 ... Ftri3G33411, Ftri4G21539, Ftri6G15835, FtriNA09472, FtriNA30346
Brassicaceae	Arabidopsis thaliana	5	AT2G41980.1, AT3G58040.1, AT3G61790.1, AT4G27880.1 ... AT5G53360.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10006100m.g.v1.0, Thhalv10006115m.g.v1.0 ... Thhalv10016984m.g.v1.0, Thhalv10025710m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g24250.v2.2, Sp5g01580.v2.2, Sp5g04680.v2.2 ... Sp7g25850.v2.2
Brassicaceae	Brassica nigra	9	BniB01g003720.2N, BniB03g012000.2N, BniB05g009550.2N ... BniB06g052760.2N, BniB06g055270.2N, BniB06g061830.2N, BniB06g063620.2N, BniB08g027310.2N, BniB08g072760.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G1188, Ceq05G0866, Ceq05G2167, Ceq09G1625
Casuarinaceae	Casuarina glauca	6	Cgl04G1346, Cgl05G0881, Cgl05G2263, Cgl05G2264, Cgl05G2439 ... Cgl09G1758
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g11310, gene.Cymno15g00870, gene.Cymno15g00880 ... gene.Cymno15g00910
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g01100, gene.Thate03g14990, gene.Thate05g25560 ... gene.Thate06g07000, gene.Thate08g04460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6157, nbisL1-mrna-8496
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1975, evm.TU.LG04.699, evm.TU.LG05.1119 ... evm.TU.LG09.459
Plantaginaceae	Plantago ovata	4	Pov_00006860, Pov_00010834, Pov_00011569, Pov_00039371
Plumbaginaceae	Limonium bicolor	8	Lb0G37756, Lb1G02344, Lb1G02347, Lb2G08140, Lb2G08206 ... Lb3G20713, Lb6G31205, Lb6G31431
Poaceae	Echinochloa crus-galli	16	AH01.3605, AH02.65, AH03.3960, AH05.557, AH07.268, BH01.3952 ... BH02.54, BH03.4264, BH05.7, BH07.1395, BH07.331, CH01.4217, CH02.62, CH03.4574, CH07.1111, CH07.233
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_1AG0000510, gene-QOZ80_1BG0048960 ... gene-QOZ80_1BG0055840, gene-QOZ80_2AG0100460, gene-QOZ80_2AG0109980, gene-QOZ80_2BG0153800, gene-QOZ80_2BG0163500, gene-QOZ80_3AG0248610, gene-QOZ80_3BG0279620, gene-QOZ80_5AG0400740, gene-QOZ80_5BG0449340, gene-QOZ80_6AG0531020, gene-QOZ80_6BG0484840, gene-QOZ80_7AG0580280, gene-QOZ80_7BG0611370
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0034990.1, HORVU.MOREX.r3.2HG0116790.1 ... HORVU.MOREX.r3.3HG0249640.1, HORVU.MOREX.r3.6HG0553110.1, HORVU.MOREX.r3.7HG0711610.1
Poaceae	Lolium multiflorum	5	gene-QYE76_010464, gene-QYE76_019984, gene-QYE76_039065 ... gene-QYE76_051628, gene-QYE76_067805
Poaceae	Oryza coarctata	12	Oco01G006080, Oco02G006130, Oco03G001620, Oco03G008120 ... Oco04G001490, Oco04G008480, Oco05G013750, Oco06G012610, Oco09G004960, Oco10G005040, Oco13G014860, Oco14G015670
Poaceae	Oryza sativa	6	LOC_Os01g13370.1, LOC_Os02g03620.1, LOC_Os02g19140.1 ... LOC_Os03g24040.1, LOC_Os05g14860.1, LOC_Os07g46560.1
Poaceae	Paspalum vaginatum	8	gene-BS78_01G351400, gene-BS78_02G377900, gene-BS78_K095500 ... gene-BS78_03G004100, gene-BS78_04G023600, gene-BS78_04G125000, gene-BS78_09G109500, gene-BS78_K147200
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102737, Pt_Chr0201309, Pt_Chr0201348, Pt_Chr0201882 ... Pt_Chr0201886, Pt_Chr0204830, Pt_Chr0305080, Pt_Chr0402786, Pt_Chr0501440
Poaceae	Sporobolus alterniflorus	17	Chr01G034900, Chr03G000640, Chr06G031480, Chr06G035460 ... Chr07G010970, Chr08G004970, Chr09G000740, Chr0G020910, Chr12G004740, Chr14G017510, Chr15G022750, Chr15G026750, Chr18G004860, Chr19G000870, Chr21G016350, Chr22G012210, Chr24G013240
Poaceae	Thinopyrum elongatum	6	Tel1E01G251100, Tel2E01G268900, Tel3E01G282700 ... Tel4E01G286900, Tel6E01G195300, Tel7E01G585700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG020130, gene_TRIDC1BG024370 ... gene_TRIDC2AG015880, gene_TRIDC2BG019180, gene_TRIDC3AG021490, gene_TRIDC3BG026330, gene_TRIDC4AG023470, gene_TRIDC4BG028360, gene_TRIDC6AG010960, gene_TRIDC6BG016160, gene_TRIDC7AG047430, gene_TRIDC7BG040320
Poaceae	Triticum aestivum	17	TraesCS1A02G136400.2, TraesCS1B02G152800.1 ... TraesCS1D02G134000.1, TraesCS2A02G129000.1, TraesCS2B02G151100.1, TraesCS2D02G131700.1, TraesCS3A02G158000.1, TraesCS3B02G185000.1, TraesCS3D02G165600.1, TraesCS4A02G148400.2, TraesCS4D02G164700.1, TraesCS6A02G086800.1, TraesCS6B02G114800.1, TraesCS7A02G332700.1, TraesCS7B02G244800.1, TraesCS7D02G340900.1, TraesCSU02G019700.1
Poaceae	Zea mays	9	Zm00001eb017210_P001, Zm00001eb119060_P001 ... Zm00001eb203310_P002, Zm00001eb231070_P001, Zm00001eb237020_P001, Zm00001eb284450_P001, Zm00001eb297140_P001, Zm00001eb329840_P001, Zm00001eb350310_P001
Poaceae	Zoysia japonica	3	nbis-gene-17894, nbis-gene-24258, nbis-gene-54924
Poaceae	Zoysia macrostachya	8	Zma_g1188, Zma_g12135, Zma_g12610, Zma_g15312, Zma_g27907 ... Zma_g30126, Zma_g7011, Zma_g9492
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.1549, evm.TU.LG04.2146, evm.TU.LG04.3257 ... evm.TU.LG05.1075, evm.TU.LG06.167, evm.TU.LG10.125, evm.TU.LG11.1674, evm.TU.LG14.803, evm.TU.LG16.342, evm.TU.LG17.124, evm.TU.LG19.1289, evm.TU.LG24.1285, evm.TU.LG25.284
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g25190, gene.Posoc01g26330, gene.Posoc03g17240 ... gene.Posoc07g01510, gene.Posoc07g01550
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_11_RagTag.47, evm.TU.Scaffold_1_RagTag.669 ... evm.TU.Scaffold_2_RagTag.1642, evm.TU.Scaffold_5_RagTag.622, evm.TU.Scaffold_7_RagTag.1725, evm.TU.Scaffold_8_RagTag.61, evm.TU.Scaffold_9_RagTag.607
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10296, nbisL1-mrna-10731, nbisL1-mrna-21607 ... nbisL1-mrna-28444, nbisL1-mrna-3568, nbisL1-mrna-4068, nbisL1-mrna-6341
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-13145, nbisL1-mrna-13278, nbisL1-mrna-13816 ... nbisL1-mrna-18922, nbisL1-mrna-19607, nbisL1-mrna-20815, nbisL1-mrna-4818, nbisL1-mrna-6971
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-14018, nbisL1-mrna-14513, nbisL1-mrna-17707 ... nbisL1-mrna-22213, nbisL1-mrna-4180
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000003l.203, evm.TU.utg000005l.352 ... evm.TU.utg000006l.668, evm.TU.utg000009l.318, evm.TU.utg000012l.398, evm.TU.utg000016l.346, evm.TU.utg000018l.946
Rhizophoraceae	Kandelia obovata	6	Maker00003102, Maker00005144, Maker00010096, Maker00011327 ... Maker00013098, Maker00017160
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10232, nbisL1-mrna-1700, nbisL1-mrna-235 ... nbisL1-mrna-2748, nbisL1-mrna-3065, nbisL1-mrna-7517, nbisL1-mrna-8399
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-11512, nbisL1-mrna-13449, nbisL1-mrna-16774 ... nbisL1-mrna-22084, nbisL1-mrna-5432, nbisL1-mrna-5633, nbisL1-mrna-7264, nbisL1-mrna-759
Salicaceae	Populus euphratica	8	populus_peu04262, populus_peu04405, populus_peu12322 ... populus_peu26065, populus_peu28022, populus_peu31552, populus_peu35082, populus_peu37645
Solanaceae	Lycium barbarum	8	gene-LOC132604611, gene-LOC132607373, gene-LOC132622729 ... gene-LOC132626025, gene-LOC132632085, gene-LOC132639652, gene-LOC132640696, gene-LOC132645431
Solanaceae	Solanum chilense	8	SOLCI000503600, SOLCI001232000, SOLCI003373100 ... SOLCI003572100, SOLCI004430900, SOLCI004961900, SOLCI005910900, SOLCI006143700
Solanaceae	Solanum pennellii	8	gene-LOC107007831, gene-LOC107008840, gene-LOC107009192 ... gene-LOC107012292, gene-LOC107020962, gene-LOC107021156, gene-LOC107032085, gene-LOC107032576
Tamaricaceae	Reaumuria soongarica	5	STRG.10847_chr07_+, STRG.12546_chr02_-, STRG.23300_chr05_+ ... STRG.28843_chr11_+, STRG.6276_chr04_-
Tamaricaceae	Tamarix chinensis	7	TC01G3093, TC01G4215, TC02G0657, TC03G1970, TC06G0110 ... TC06G1541, TC08G1359
Zosteraceae	Zostera marina	3	Zosma02g02500.v3.1, Zosma02g20290.v3.1, Zosma04g04190.v3.1