halophFGD

Basic Information

Locus ID: Ag6G02023

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: protein DEHYDRATION-INDUCED 19 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	152240788	152245523	+	Ag6G02023

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	24,522.42 Da	64.09	74.91	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14571	Stress-induced protein Di19, C-terminal	115	215	2.0E-33	IPR027935
Pfam	PF05605	Drought induced 19 protein (Di19), zinc-binding	42	95	1.3E-21	IPR008598

KEGG Pathway

KO Term:

K22376 (E3 ubiquitin-protein ligase KCMF1 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05700.1	Drought-responsive family protein.
RefSeq	XP_017231535.1	PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q84J70	Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=DI19-3 PE=1 SV=1
TrEMBL	A0A162AQY7	Drought-responsive family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005410 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.741333	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.232937	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	24.144537	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.004993	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	25.504478	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	31.85602	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	26.703651	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	26.047689	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	51.707996	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	56.261246	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	61.785702	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	53.423779	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	55.575142	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	49.495464	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	45.536224	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	44.105785	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	47.54377	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	54.469925	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	49.668068	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	63.379871	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	62.996265	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	67.664291	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	65.042496	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	63.249672	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	59.623653	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	52.733665	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	56.620148	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	53.273514	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	58.169155	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	41.629314		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	35.620705		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	29.954708		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	54.512054		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	45.360584		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	65.314644		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	39.543579		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	52.439087		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	43.160702		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	35.717239	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	25.26462	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	25.350666	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	101.704178	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	75.266937	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	122.494194	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	97.032928	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	95.477745	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	79.74044	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	64.700081	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	77.197929	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	76.669159	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg12381, jg1401, jg16061, jg26528, jg28261, jg29965, jg35145 ... jg38418
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11957, gene_15928, gene_5266
Amaranthaceae	Atriplex hortensis	3	Ah005681, Ah019150, Ah029343
Amaranthaceae	Beta vulgaris	2	BVRB_3g048090, BVRB_4g076590
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17218, Sbi_jg37977, Sbi_jg6109, Sbi_jg61828
Amaranthaceae	Salicornia europaea	2	Seu_jg15729, Seu_jg477
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00006176, GOSA_00015400, GOSA_00024894, GOSA_00024895
Amaranthaceae	Suaeda glauca	8	Sgl00891, Sgl05845, Sgl05968, Sgl24415, Sgl29590, Sgl74044 ... Sgl77534, Sgl77743
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000000838, gene:ENSEOMG00000007675 ... gene:ENSEOMG00000011665, gene:ENSEOMG00000028269, gene:ENSEOMG00000032535, gene:ENSEOMG00000037882, gene:ENSEOMG00000038388, gene:ENSEOMG00000040662, gene:ENSEOMG00000043413, gene:ENSEOMG00000043901
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0001040, CQ.Regalona.r1.3BG0001100 ... CQ.Regalona.r1.4AG0007450, CQ.Regalona.r1.4BG0007710, CQ.Regalona.r1.7AG0012290, CQ.Regalona.r1.7BG0014410
Anacardiaceae	Pistacia vera	3	pistato.v30081950, pistato.v30082060, pistato.v30233680
Apiaceae	Apium graveolens	6	Ag1G01991, Ag5G02388, Ag6G02023, Ag7G00769, Ag8G00955 ... Ag9G01901
Arecaceae	Cocos nucifera	3	COCNU_01G001540, COCNU_12G002730, COCNU_16G004030
Arecaceae	Phoenix dactylifera	6	gene-LOC103711242, gene-LOC103712425, gene-LOC103712615 ... gene-LOC103720018, gene-LOC120109301, gene-LOC120109426
Asparagaceae	Asparagus officinalis	11	AsparagusV1_01.2621.V1.1, AsparagusV1_01.3332.V1.1 ... AsparagusV1_02.2162.V1.1, AsparagusV1_03.1656.V1.1, AsparagusV1_05.1492.V1.1, AsparagusV1_05.2181.V1.1, AsparagusV1_07.1342.V1.1, AsparagusV1_07.1343.V1.1, AsparagusV1_07.3138.V1.1, AsparagusV1_08.3191.V1.1, AsparagusV1_09.1412.V1.1
Asteraceae	Flaveria trinervia	6	Ftri14G08356, Ftri15G06716, Ftri15G21850, Ftri16G19672 ... Ftri3G05515, Ftri3G32261
Brassicaceae	Arabidopsis thaliana	7	AT1G02750.1, AT1G56280.1, AT3G05700.1, AT3G06760.2 ... AT4G02200.3, AT5G26990.1, AT5G49230.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10004901m.g.v1.0, Thhalv10004911m.g.v1.0 ... Thhalv10008730m.g.v1.0, Thhalv10021475m.g.v1.0, Thhalv10021933m.g.v1.0, Thhalv10023620m.g.v1.0, Thhalv10028950m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g01730.v2.2, Sp2g19610.v2.2, Sp2g21060.v2.2 ... Sp3g04580.v2.2, Sp3g05730.v2.2, Sp6g02100.v2.2
Brassicaceae	Brassica nigra	9	BniB01g056970.2N, BniB02g000300.2N, BniB02g060220.2N ... BniB02g078870.2N, BniB03g024450.2N, BniB03g038200.2N, BniB04g004620.2N, BniB07g037680.2N, BniB07g059420.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1011, Ceq06G1136, Ceq09G1082
Casuarinaceae	Casuarina glauca	3	Cgl06G1042, Cgl06G1183, Cgl09G1173
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g17940, gene.Cymno03g02250
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g03260, gene.Thate07g09970
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5098
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2516, evm.TU.LG04.402, evm.TU.LG11.1241
Plantaginaceae	Plantago ovata	4	Pov_00007190, Pov_00026065, Pov_00036779, Pov_00039227
Plumbaginaceae	Limonium bicolor	2	Lb1G06599, Lb2G11759
Poaceae	Echinochloa crus-galli	8	AH05.2815, AH05.3720, BH01.2209, BH05.2931, BH05.3759 ... CH01.2301, CH05.2914, CH05.3954
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_5AG0393580
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0061330.1, HORVU.MOREX.r3.5HG0443980.1
Poaceae	Lolium multiflorum	1	gene-QYE76_001774
Poaceae	Oryza coarctata	4	Oco09G007420, Oco10G007650, Oco23G008200, Oco24G007840
Poaceae	Oryza sativa	2	LOC_Os05g28980.1, LOC_Os12g36900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_08G099800, gene-BS78_09G112900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0703825
Poaceae	Sporobolus alterniflorus	6	Chr01G022180, Chr06G017530, Chr12G015660, Chr18G006840 ... Chr19G009390, Chr22G010510
Poaceae	Thinopyrum elongatum	2	Tel1E01G381900, Tel5E01G177700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG034200, gene_TRIDC1BG039640 ... gene_TRIDC5AG013870, gene_TRIDC5BG015930
Poaceae	Triticum aestivum	6	TraesCS1A02G227200.1, TraesCS1B02G241300.1 ... TraesCS1D02G228800.1, TraesCS5A02G090400.2, TraesCS5B02G096100.2, TraesCS5D02G102400.1
Poaceae	Zea mays	2	Zm00001eb285900_P003, Zm00001eb410020_P001
Poaceae	Zoysia japonica	4	nbis-gene-17816, nbis-gene-30311, nbis-gene-37164 ... nbis-gene-46433
Poaceae	Zoysia macrostachya	3	Zma_g25961, Zma_g26686, Zma_g27953
Portulacaceae	Portulaca oleracea	5	evm.TU.LG08.727, evm.TU.LG11.1371, evm.TU.LG18.1290 ... evm.TU.LG20.598, evm.TU.LG22.1334
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g07750
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.82, evm.TU.Scaffold_2_RagTag.2087 ... evm.TU.Scaffold_2_RagTag.2088, evm.TU.Scaffold_3_RagTag.625, evm.TU.Scaffold_5_RagTag.823
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11511, nbisL1-mrna-2900, nbisL1-mrna-8194
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-12860, nbisL1-mrna-15204, nbisL1-mrna-15858 ... nbisL1-mrna-568, nbisL1-mrna-7121
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11459, nbisL1-mrna-13661, nbisL1-mrna-458 ... nbisL1-mrna-5167
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000006l.196, evm.TU.utg000009l.36 ... evm.TU.utg000009l.37, evm.TU.utg000011l.320, evm.TU.utg000012l.57, evm.TU.utg000012l.58, evm.TU.utg000019l.838
Rhizophoraceae	Kandelia obovata	5	Maker00005309, Maker00006882, Maker00011234, Maker00012436 ... Maker00013809
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10101, nbisL1-mrna-13001, nbisL1-mrna-13759 ... nbisL1-mrna-7900, nbisL1-mrna-7901
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13065, nbisL1-mrna-16131, nbisL1-mrna-7455
Salicaceae	Populus euphratica	9	populus_peu08026, populus_peu08033, populus_peu13318 ... populus_peu15635, populus_peu22398, populus_peu22408, populus_peu27300, populus_peu31291, populus_peu31292
Solanaceae	Lycium barbarum	4	gene-LOC132598405, gene-LOC132604512, gene-LOC132608810 ... gene-LOC132626660
Solanaceae	Solanum chilense	3	SOLCI002719100, SOLCI005070800, SOLCI005285300
Solanaceae	Solanum pennellii	4	gene-LOC107005364, gene-LOC107007822, gene-LOC107009134 ... gene-LOC107031760
Tamaricaceae	Reaumuria soongarica	3	STRG.32666_chr09_+, STRG.7923_chr04_+, gene_7046
Tamaricaceae	Tamarix chinensis	3	TC01G0433, TC02G0898, TC05G1453
Zosteraceae	Zostera marina	1	Zosma04g25310.v3.1