Basic Information
Locus ID:
Ag6G02010
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FACT complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 149578292 | 149583419 | + | Ag6G02010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 118,848.00 Da | 47.03 | 78.92 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01091 | CDC68-like | 193 | 435 | 8.89465E-99 | IPR033825 |
| Pfam | PF08512 | Histone chaperone Rttp106-like | 829 | 915 | 1.5E-17 | IPR013719 |
| Pfam | PF00557 | Metallopeptidase family M24 | 196 | 425 | 1.0E-28 | IPR000994 |
| Pfam | PF08644 | FACT complex subunit (SPT16/CDC68) | 548 | 702 | 1.1E-50 | IPR013953 |
| Pfam | PF14826 | FACT complex subunit SPT16 N-terminal lobe domain | 15 | 179 | 3.2E-47 | IPR029148 |
| SUPERFAMILY | SSF55920 | Creatinase/aminopeptidase | 191 | 445 | 3.66E-34 | IPR036005 |
| Gene3D | G3DSA:3.40.350.10 | - | 14 | 185 | 1.4E-53 | IPR029149 |
| Gene3D | G3DSA:3.90.230.10 | Creatinase/methionine aminopeptidase superfamily | 186 | 447 | 1.1E-66 | IPR036005 |
| Gene3D | G3DSA:2.30.29.210 | FACT complex subunit Spt16p/Cdc68p | 524 | 649 | 2.7E-34 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 820 | 952 | 2.6E-55 | IPR011993 |
| Gene3D | G3DSA:2.30.29.150 | - | 650 | 812 | 2.3E-60 | - |
| SMART | SM01286 | SPT16_2 | 548 | 702 | 1.0E-85 | IPR013953 |
| SMART | SM01287 | Rtt106_2 | 827 | 917 | 1.3E-36 | IPR013719 |
| SMART | SM01285 | FACT_Spt16_Nlob_2 | 15 | 181 | 2.0E-74 | IPR029148 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1010 | 1038 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 951 | 1064 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 1009 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 524 | - | - |
| Coils | Coil | Coil | 987 | 1007 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10710.1 | global transcription factor C. encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC. | 0 |
| RefSeq | XP_017235648.1 | PREDICTED: FACT complex subunit SPT16-like [Daucus carota subsp. sativus] | 0 |
| Q7X923 | FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPT16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161Y560 | FACT complex subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005264 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 56.13287 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 38.009651 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 41.511322 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 42.874062 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 43.207146 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 51.803585 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 44.413799 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 53.490551 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.512814 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 38.721687 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 42.945683 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 49.764168 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.007557 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.085648 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.173019 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.116032 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.719575 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.68102 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.620186 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.16126 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.761569 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.5156 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.443251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.753667 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.635993 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.098186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.31091 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.572198 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.840543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.006969 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.840543 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.336704 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 36.773476 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.369781 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 44.338852 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.881519 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.900013 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.384713 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.490693 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.928515 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.299034 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.566933 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.36849 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.649703 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.539375 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.428497 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.42239 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.341204 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.596174 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.753292 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26490, jg28277, jg30002, jg30003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10261 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17590, Sbi_jg62262 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg839 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007391 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl14225, Sgl14407, Sgl19371, Sgl19576, Sgl19577, Sgl45926 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009507, gene:ENSEOMG00000029745 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0000310, CQ.Regalona.r1.4AG0004890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095750 |
| Apiaceae | Apium graveolens | 4 | Ag1G00560, Ag2G00322, Ag6G02010, Ag6G02871 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002440, COCNU_12G001840 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713979, gene-LOC103717831 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2247.V1.1, AsparagusV1_07.2829.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G21229 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10670.1, AT4G10710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06780.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g041080.2N, BniB05g058310.2N, BniB08g051870.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0475, Ceq06G0476 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0486, Cgl06G0487 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0167s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8272 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1651, evm.TU.LG03.1652 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038171 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06698, Lb1G06711 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3378, AH09.531, BH01.4725, BH09.679 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0322830, gene-QOZ80_4BG0356180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0104510.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_021674, gene-QYE76_021696, gene-QYE76_030380 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G002930, Oco08G003260, Oco23G005990 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g25550.1, LOC_Os08g31240.1, LOC_Os12g26030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G130800, gene-BS78_10G036900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107714 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015870, Chr26G004020 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G054000, Tel2E01G054900, Tel2E01G055400 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG007560, gene_TRIDC2BG002050 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G017400.1, TraesCS2A02G069500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229990_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-49057, nbis-gene-49081, nbis-gene-49759 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19462, Zma_g21080 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1261, evm.TU.LG08.1263, evm.TU.LG22.166 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.26, evm.TU.Scaffold_1_RagTag.27 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2860, nbisL1-mrna-2936, nbisL1-mrna-8255 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3800, nbisL1-mrna-7793 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13634, nbisL1-mrna-5124 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.12, evm.TU.utg000009l.12 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006202, Maker00011133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13027, nbisL1-mrna-19927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16095, nbisL1-mrna-24 |
| Salicaceae | Populus euphratica | 5 | populus_peu13175, populus_peu13176, populus_peu13177 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598495, gene-LOC132598497 |
| Solanaceae | Solanum chilense | 3 | SOLCI003275300, SOLCI003275400, SOLCI007501600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002544, gene-LOC107004067, gene-LOC107008231 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32274_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1430 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04850.v3.1 |