halophFGD

Basic Information

Locus ID: Ag6G01951

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: WNK1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	142528927	142531643	-	Ag6G01951

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.09	64,828.98 Da	36.11	76.50	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13983	STKc_WNK	19	278	1.38611E-168	-
Pfam	PF12202	Oxidative-stress-responsive kinase 1 C-terminal domain	376	428	6.6E-6	IPR024678
Pfam	PF00069	Protein kinase domain	24	278	2.8E-51	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	24	310	9.58E-67	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	104	284	8.1E-53	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	5	102	6.8E-31	-
Gene3D	G3DSA:3.10.20.90	-	373	441	1.6E-5	-
SMART	SM00220	serkin_6	21	278	1.2E-64	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	21	278	40.202057	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	145	157	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004674 (protein serine/threonine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08867 (WNK lysine deficient protein kinase [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G04910.1	with no lysine (K) kinase 1. Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.
RefSeq	XP_017232677.1	PREDICTED: probable serine/threonine-protein kinase WNK9 [Daucus carota subsp. sativus]
Swiss-Prot	Q9CAV6	Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana OX=3702 GN=WNK1 PE=1 SV=1
TrEMBL	A0A161X489	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006612 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	4.025067	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.005576	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.921291	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.286663	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.555019	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.344925	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.151548	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.081	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.651181	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.180249	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.120837	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.901109	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.964449	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.887531	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.562355	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.505377	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.169001	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.240199	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.130591	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.084178	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.091462	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.554649	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.877525	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.092195	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.122848	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.564115	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.475246	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.165546	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.366371	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.06697		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.117509		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.037053		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.14783		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.38601		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.025993		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.023288		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.239466	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.063965	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.031779	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.198538	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.020014	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.017802	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.158812	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.235618	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.953703	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.999502	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg12561, jg27893, jg5735
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10071, gene_2576
Amaranthaceae	Atriplex hortensis	2	Ah006051, Ah037591
Amaranthaceae	Beta vulgaris	1	BVRB_4g081870
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16836, Sbi_jg5166, Sbi_jg61369, Sbi_jg6957
Amaranthaceae	Salicornia europaea	2	Seu_jg123, Seu_jg13118
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003657, GOSA_00003658, GOSA_00008227
Amaranthaceae	Suaeda glauca	5	Sgl00127, Sgl00296, Sgl05352, Sgl24811, Sgl29959
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008852, gene:ENSEOMG00000017685 ... gene:ENSEOMG00000026484, gene:ENSEOMG00000038980, gene:ENSEOMG00000040641, gene:ENSEOMG00000051807
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0010210, CQ.Regalona.r1.4BG0010420 ... CQ.Regalona.r1.9AG0006320, CQ.Regalona.r1.9BG0016500
Anacardiaceae	Pistacia vera	2	pistato.v30091690, pistato.v30236820
Apiaceae	Apium graveolens	6	Ag1G01868, Ag5G02498, Ag6G01922, Ag6G01951, Ag8G01602 ... AgUnG01591
Arecaceae	Cocos nucifera	2	COCNU_06G014450, contig69553323G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103717647, gene-LOC103723763, gene-LOC120108451
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1608.V1.1, AsparagusV1_07.3719.V1.1 ... AsparagusV1_08.909.V1.1
Asteraceae	Flaveria trinervia	2	Ftri3G26261, Ftri4G07256
Brassicaceae	Arabidopsis thaliana	3	AT3G04910.1, AT3G22420.2, AT5G28080.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10004283m.g.v1.0, Thhalv10020195m.g.v1.0 ... Thhalv10020315m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g20250.v2.2, Sp3g03720.v2.2, Sp3g20180.v2.2
Brassicaceae	Brassica nigra	5	BniB01g040210.2N, BniB01g058680.2N, BniB02g079430.2N ... BniB07g033190.2N, BniB07g038180.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2349, Ceq09G1345
Casuarinaceae	Casuarina glauca	2	Cgl06G2473, Cgl09G1435
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g11720
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g37500
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-12071
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2292, evm.TU.LG11.1042
Plantaginaceae	Plantago ovata	2	Pov_00021298, Pov_00025983
Plumbaginaceae	Limonium bicolor	6	Lb3G15925, Lb3G15926, Lb4G21744, Lb4G24285, Lb6G29641 ... Lb8G36681
Poaceae	Echinochloa crus-galli	6	AH03.3399, AH03.433, BH03.3652, BH03.529, CH03.3845 ... CH03.618
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_7AG0558520, gene-QOZ80_7AG0573860 ... gene-QOZ80_7BG0589660, gene-QOZ80_7BG0605070
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0132510.1
Poaceae	Lolium multiflorum	1	gene-QYE76_040153
Poaceae	Oryza coarctata	3	Oco13G010620, Oco14G003010, Oco14G011330
Poaceae	Oryza sativa	2	LOC_Os07g08750.1, LOC_Os07g38530.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G058000, gene-BS78_02G323000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0303730, Pt_Chr0304508
Poaceae	Sporobolus alterniflorus	6	Chr19G003880, Chr24G000210, Chr24G010820, Chr27G013390 ... Chr28G002090, Chr28G010010
Poaceae	Thinopyrum elongatum	1	Tel2E01G375300
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG025210, gene_TRIDC2BG029650
Poaceae	Triticum aestivum	3	TraesCS2A02G195900.2, TraesCS2B02G223600.1 ... TraesCS2D02G203900.2
Poaceae	Zea mays	3	Zm00001eb107400_P001, Zm00001eb301720_P002 ... Zm00001eb325080_P001
Poaceae	Zoysia japonica	2	nbis-gene-10542, nbis-gene-26789
Poaceae	Zoysia macrostachya	2	Zma_g5399, Zma_g6104
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1742, evm.TU.LG08.535, evm.TU.LG11.1094 ... evm.TU.LG22.1561
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g04900
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.199, evm.TU.Scaffold_2_RagTag.1966 ... evm.TU.Scaffold_3_RagTag.445
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1476, nbisL1-mrna-3380, nbisL1-mrna-8034
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11631, nbisL1-mrna-49, nbisL1-mrna-6490
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-13759, nbisL1-mrna-5258, nbisL1-mrna-6174
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.111, evm.TU.utg000012l.137 ... evm.TU.utg000019l.953
Rhizophoraceae	Kandelia obovata	3	Maker00005737, Maker00010946, Maker00012903
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12926, nbisL1-mrna-6353, nbisL1-mrna-7821
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-16227, nbisL1-mrna-185, nbisL1-mrna-2124
Salicaceae	Populus euphratica	4	populus_peu07378, populus_peu13541, populus_peu15870 ... populus_peu21382
Solanaceae	Lycium barbarum	2	gene-LOC132609213, gene-LOC132645250
Solanaceae	Solanum chilense	2	SOLCI001721500, SOLCI006482400
Solanaceae	Solanum pennellii	2	gene-LOC107031245, gene-LOC107031313
Tamaricaceae	Reaumuria soongarica	3	STRG.32051_chr09_-, gene_12003, gene_7926
Tamaricaceae	Tamarix chinensis	3	TC02G0149, TC05G2294, TC06G0850
Zosteraceae	Zostera marina	2	Zosma04g10340.v3.1, Zosma06g23130.v3.1