Basic Information
Locus ID:
Ag6G01946
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 141754404 | 141758822 | - | Ag6G01946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 90,375.76 Da | 41.42 | 84.31 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16278 | C2HE / C2H2 / C2HC zinc-binding finger | 740 | 793 | 1.8E-9 | IPR032566 |
| Pfam | PF13671 | AAA domain | 23 | 131 | 2.3E-13 | - |
| Pfam | PF11969 | Scavenger mRNA decapping enzyme C-term binding | 622 | 735 | 1.3E-24 | - |
| Pfam | PF01661 | Macro domain | 426 | 497 | 3.3E-5 | IPR002589 |
| SUPERFAMILY | SSF52949 | Macro domain-like | 385 | 524 | 1.96E-15 | IPR043472 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 19 | 130 | 9.63E-14 | IPR027417 |
| SUPERFAMILY | SSF54197 | HIT-like | 607 | 781 | 6.63E-34 | IPR036265 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 304 | 392 | 1.8E-5 | IPR043472 |
| Gene3D | G3DSA:3.30.428.10 | - | 617 | 798 | 6.6E-48 | IPR036265 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 393 | 537 | 1.8E-17 | IPR043472 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 177 | 3.5E-34 | IPR027417 |
| SMART | SM00506 | YBR022w_8 | 403 | 542 | 0.0053 | IPR002589 |
| ProSiteProfiles | PS51154 | Macro domain profile. | 391 | 658 | 11.42985 | IPR002589 |
| ProSitePatterns | PS00892 | HIT domain signature. | 704 | 722 | - | IPR019808 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 610 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01310.1 | APRATAXIN-like. Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro. | 0 |
| RefSeq | XP_017234884.1 | PREDICTED: transcription factor bHLH140 [Daucus carota subsp. sativus] | 0 |
| Q9M041 | Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1 | 0 | |
| TrEMBL | A0A161Y8F7 | Macro domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006624 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.949312 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.698459 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.97592 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.630978 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.163155 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.717335 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.402446 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.677092 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.309155 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.680082 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.563089 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.310299 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.005741 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.845729 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.102352 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.003762 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.408046 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.999439 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.866567 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.121414 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.417045 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.763674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.664868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.450422 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.173243 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.317828 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.62856 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.621617 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.871316 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.348991 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.596973 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.868555 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.431172 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.739682 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.760447 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.809552 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.504231 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.244465 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.163463 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.16353 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.216476 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.725121 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.165614 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.878789 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.583953 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.031073 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.039981 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.354403 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.418902 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.294448 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2277 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003299 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4795, Sbi_jg7283 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001443 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51677, Sgl56981 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005809, gene:ENSEOMG00000023602 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010450, CQ.Regalona.r1.5BG0010950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267340 |
| Apiaceae | Apium graveolens | 1 | Ag6G01946 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706712 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.495.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08666, Ftri15G17084 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012562m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g058190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0990 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1009 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0376s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32360 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.980, evm.TU.LG01.982 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09237 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3981, BH01.4373, CH01.4613 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244360, gene-QOZ80_3BG0283800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384570.1 |
| Poaceae | Oryza coarctata | 1 | Oco06G010940 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G388500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102425, Pt_Chr0102453 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G032100, Chr04G008750, Chr07G002940 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G345200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015300, gene_TRIDC4BG033670 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G110800.1, TraesCS4B02G193300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb013510_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3609 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3832 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2826, evm.TU.LG16.826 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.608 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4584, nbisL1-mrna-4594 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9572 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9592 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1001 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2672 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16677 |
| Salicaceae | Populus euphratica | 2 | populus_peu25419, populus_peu25441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630876 |
| Solanaceae | Solanum chilense | 1 | SOLCI001532700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031205 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13211 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2788 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13730.v3.1 |