Basic Information
Locus ID:
Ag6G01940
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 140602474 | 140605247 | - | Ag6G01940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 98,474.37 Da | 49.81 | 78.04 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| Coils | Coil | Coil | 470 | 500 | - | - |
| Coils | Coil | Coil | 513 | 534 | - | - |
| Coils | Coil | Coil | 689 | 716 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58110.1 | 0 | |
| RefSeq | XP_017235628.1 | PREDICTED: MATH and LRR domain-containing protein PFE0570w [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166DX11 | DUF4283 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006629 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.963034 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.417996 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.041579 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.551741 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.941376 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.333611 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.277276 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.550694 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.267093 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.167893 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.180747 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.132105 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.158363 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.935205 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.132972 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.465663 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.982453 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.747019 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.033782 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.638867 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.375129 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.500622 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.477326 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.660645 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.022463 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.937559 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.827495 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.992716 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.540103 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.139177 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.610377 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.738696 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.276584 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.510371 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.35871 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.995224 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.938165 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.25241 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.416448 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.95568 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.255851 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.932652 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.296236 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.317784 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.280739 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.242515 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.489006 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.71136 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.371003 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.122159 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1299, jg19331 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21114 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011966 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41517, Sbi_jg48645 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019103 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79218, Sgl81678 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016434, gene:ENSEOMG00000038570 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0009460, CQ.Regalona.r1.9BG0014230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089530 |
| Apiaceae | Apium graveolens | 2 | Ag5G00020, Ag6G01940 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002800, COCNU_14G003970 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702712, gene-LOC103709528 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2533.V1.1, AsparagusV1_05.1717.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G42370.1, AT3G58110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005785m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g055230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2774 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2885, Cgl02G2886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4326 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1228, evm.TU.LG04.1743 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004607 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19434 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1906, BH06.1752, CH06.1945 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0542120, gene-QOZ80_6BG0495360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709690.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_049148, gene-QYE76_049622, gene-QYE76_057186 |
| Poaceae | Oryza coarctata | 3 | Oco11G010460, Oco12G010570, Oco13G000520 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G156800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0205828, Pt_Chr0303354, Pt_Chr0303401, Pt_Chr0400141 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G028550, Chr05G006230, Chr10G015830, Chr10G015840 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G573400, Tel7E01G645700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG054850 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G077500.1, TraesCS7A02G346100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb204940_P001, Zm00001eb238760_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10278, nbis-gene-19338 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30665, Zma_g32897 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.702, evm.TU.LG26.325 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09750 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.1294, evm.TU.Scaffold_9_RagTag.1191 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11776, nbisL1-mrna-11780, nbisL1-mrna-20989 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16667, nbisL1-mrna-8644 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11158, nbisL1-mrna-18687, nbisL1-mrna-18688 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.274, add.evm.TU.utg000006l.296 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009130, Maker00014091 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17246, nbisL1-mrna-20655 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4884 |
| Salicaceae | Populus euphratica | 2 | populus_peu16719, populus_peu18804 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620374 |
| Solanaceae | Solanum chilense | 1 | SOLCI007276200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026038 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.7050_chr04_-, gene_18032 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0908, TC02G1465 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07890.v3.1 |