Basic Information
Locus ID:
Ag6G01939
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
NOL
Description:
Chlorophyll(Ide) b reductase NOL
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 140596589 | 140602271 | + | Ag6G01939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 40,810.62 Da | 41.98 | 92.31 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05233 | SDR_c | 81 | 322 | 2.91144E-57 | - |
| Pfam | PF00106 | short chain dehydrogenase | 81 | 276 | 9.2E-45 | IPR002347 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 80 | 305 | 1.82E-48 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 76 | 322 | 1.3E-51 | - |
| ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. | 220 | 248 | - | IPR020904 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 156 | 167 | 1.6E-19 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 206 | 222 | 1.6E-19 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 257 | 274 | 1.6E-19 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 80 | 97 | 1.6E-19 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 156 | 167 | 2.7E-6 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 212 | 220 | 2.7E-6 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 233 | 252 | 2.7E-6 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 233 | 252 | 1.6E-19 | IPR002347 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R08914 (7(1)-Hydroxychlorophyllide a + NAD+ <=> Chlorophyllide b + NADH + H+)
R08915 (7(1)-Hydroxychlorophyllide a + NADP+ <=> Chlorophyllide b + NADPH + H+)
R09069 (7(1)-Hydroxychlorophyll a + NAD+ <=> Chlorophyll b + NADH + H+)
R09070 (7(1)-Hydroxychlorophyll a + NADP+ <=> Chlorophyll b + NADPH + H+)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04900.1 | NYC1-like. Encodes a chlorophyll b reducatase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II). | 0 |
| RefSeq | XP_017235629.1 | PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q8LEU3 | Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NOL PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ATT8 | Chlorophyll(Ide) b reductase NOL, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.833442 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.363892 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.900285 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.204691 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.895797 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.956782 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.744313 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.369293 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.723578 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.075978 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.104689 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.295782 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.714666 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.034225 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.724396 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.356191 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.278963 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.337135 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.065392 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.702146 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.248456 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.096972 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.654167 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.374537 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.832915 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.736003 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.976072 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.308682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.796214 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.428136 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.019278 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.902122 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.171874 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.134487 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.850039 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.157324 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.061082 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.600122 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.663521 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.575033 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.543077 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.458163 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.497629 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.481531 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.672615 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.389783 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.405084 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.99364 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.562037 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.225965 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1488 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11455 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006602 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg201, Sbi_jg36341 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4410 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029155 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl25325, Sgl25326, Sgl30503 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010860, gene:ENSEOMG00000029459 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013360, CQ.Regalona.r1.4BG0016080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168980 |
| Apiaceae | Apium graveolens | 1 | Ag6G01939 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G020930 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697059, gene-LOC120104100 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G22564 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013856m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37910.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g001910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1595 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00450 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0103s00010.v1.0, Dusal.0103s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.872 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014731 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31532 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1289, BH01.1336, CH01.1384 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223440, gene-QOZ80_3BG0268270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0332930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063274 |
| Poaceae | Oryza coarctata | 1 | Oco05G019290 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g45194.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G139600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104581, Pt_Chr0104618 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G009000, Chr07G024030, Chr12G028140 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G030900, Tel7E01G138500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG040840, gene_TRIDC4AG040850 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G261200.1, TraesCS4A02G299400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218390_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20534 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3153 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2548, evm.TU.LG08.157, evm.TU.LG13.1033 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1214 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3874 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17282 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18779 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.492 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005950 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12395 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5509 |
| Salicaceae | Populus euphratica | 1 | populus_peu06036 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608726 |
| Solanaceae | Solanum chilense | 1 | SOLCI005800600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020324 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18011 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1377 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32990.v3.1 |