Basic Information
Locus ID:
Ag6G01928
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 138420977 | 138431518 | - | Ag6G01928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 49,360.51 Da | 32.70 | 83.49 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 170 | 249 | 3.8E-13 | IPR020683 |
| Pfam | PF13606 | Ankyrin repeat | 124 | 151 | 2.4E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 50 | 118 | 3.1E-14 | IPR020683 |
| SUPERFAMILY | SSF48452 | TPR-like | 333 | 446 | 2.4E-31 | IPR011990 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 21 | 274 | 1.03E-56 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 129 | 155 | 2.9E-5 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 95 | 128 | 1.4E-11 | IPR036770 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 332 | 447 | 5.9E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 94 | 9.8E-15 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 156 | 329 | 2.2E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 188 | 217 | 0.0042 | IPR002110 |
| SMART | SM00248 | ANK_2a | 155 | 184 | 0.71 | IPR002110 |
| SMART | SM00028 | tpr_5 | 402 | 435 | 6.9E-4 | IPR019734 |
| SMART | SM00248 | ANK_2a | 56 | 86 | 0.49 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 249 | 5.9E-7 | IPR002110 |
| SMART | SM00028 | tpr_5 | 334 | 367 | 3.8 | IPR019734 |
| SMART | SM00028 | tpr_5 | 368 | 401 | 18.0 | IPR019734 |
| SMART | SM00248 | ANK_2a | 123 | 152 | 9.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 252 | 281 | 1100.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 90 | 119 | 3.1E-6 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 90 | 117 | 12.461023 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 123 | 155 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 13.91808 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 155 | 187 | 9.35067 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 252 | 12.540617 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 188 | 217 | 8.905817 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 188 | 220 | 9.53764 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 90 | 122 | 13.54414 | IPR002110 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 402 | 435 | 10.0894 | IPR019734 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 123 | 155 | 13.51743 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 139 | 153 | 1.6E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 91 | 106 | 1.6E-6 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 338 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04710.1 | ankyrin repeat family protein. | 0 |
| RefSeq | XP_017231449.1 | PREDICTED: putative ankyrin repeat protein RF_0381 [Daucus carota subsp. sativus] | 0 |
| Q9M324 | Serine/threonine-protein kinase BSK6 OS=Arabidopsis thaliana OX=3702 GN=BSK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DXW2 | Ankyrin-1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.081396 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.038342 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.287886 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.17703 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.395177 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.283631 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.517396 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.626749 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.259354 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.62359 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.534431 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.606546 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.766392 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.520391 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.824688 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.140324 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.35276 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.300886 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.803662 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.976444 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.04044 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.772314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.860449 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.56872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.661991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.948004 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.636299 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.342933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.834927 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.666718 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.207878 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.335615 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.800969 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.871035 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.886203 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.410022 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.494539 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.652969 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.572531 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.034946 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.863462 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.420326 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.463497 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.373428 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.581752 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.81399 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.005078 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.769527 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.228859 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 41.389111 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1475, jg35382 |
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_10113, gene_18415, gene_19340, gene_19341, gene_19342 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah000253, Ah000255, Ah006237, Ah015373, Ah026151, Ah037550 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g083870, BVRB_5g120420, BVRB_6g137150 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg16765, Sbi_jg31543, Sbi_jg57757, Sbi_jg57758 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg22992, Seu_jg25400, Seu_jg3587, Seu_jg3588 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00008163, GOSA_00019498, GOSA_00019499 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24903, Sgl30049, Sgl54319, Sgl59664 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006664, gene:ENSEOMG00000011535 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4AG0011120, CQ.Regalona.r1.4BG0011370 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30184200 |
| Apiaceae | Apium graveolens | 1 | Ag6G01928 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002080 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103716575, gene-LOC113461912, gene-LOC120105337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2016.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G34029 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04710.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020698m.g.v1.0, Thhalv10021827m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03550.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g033370.2N, BniB07g062080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01410 |
| Dunaliellaceae | Dunaliella salina | 7 | Dusal.0011s00023.v1.0, Dusal.0052s00030.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7871 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2245 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00007891, Pov_00007892, Pov_00007894, Pov_00007897 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06950 |
| Poaceae | Echinochloa crus-galli | 69 | AH01.1043, AH01.1044, AH01.1045, AH01.1047, AH01.1236 ... |
| Poaceae | Eleusine coracana subsp. coracana | 34 | gene-QOZ80_2AG0114770, gene-QOZ80_2AG0117870 ... |
| Poaceae | Hordeum vulgare | 23 | HORVU.MOREX.r3.1HG0001130.1, HORVU.MOREX.r3.1HG0074060.1 ... |
| Poaceae | Lolium multiflorum | 82 | gene-QYE76_000174, gene-QYE76_000175, gene-QYE76_000212 ... |
| Poaceae | Oryza coarctata | 19 | Oco02G002900, Oco02G003120, Oco03G010420, Oco03G010440 ... |
| Poaceae | Oryza sativa | 26 | LOC_Os01g07640.1, LOC_Os01g07980.1, LOC_Os01g08000.2 ... |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_01G125500, gene-BS78_01G125600, gene-BS78_K147400 ... |
| Poaceae | Puccinellia tenuiflora | 62 | Pt_Chr0100997, Pt_Chr0102045, Pt_Chr0103021, Pt_Chr0103022 ... |
| Poaceae | Sporobolus alterniflorus | 37 | Chr01G008300, Chr01G009560, Chr01G014200, Chr02G015620 ... |
| Poaceae | Thinopyrum elongatum | 45 | Tel1E01G021800, Tel1E01G087300, Tel1E01G103100 ... |
| Poaceae | Triticum dicoccoides | 83 | gene_TRIDC1AG000630, gene_TRIDC1AG004720 ... |
| Poaceae | Triticum aestivum | 137 | TraesCS1A02G009000.3, TraesCS1A02G043400.1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb031110_P003, Zm00001eb032790_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30498, nbis-gene-48843, nbis-gene-52515 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19414, Zma_g26077, Zma_g26238 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2875, evm.TU.LG01.2876, evm.TU.LG02.1155 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1937 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3354 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-66 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13784 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005193 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16253 |
| Salicaceae | Populus euphratica | 3 | populus_peu13592, populus_peu15136, populus_peu15937 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132645306, gene-LOC132645307 |
| Solanaceae | Solanum chilense | 1 | SOLCI001390300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008320, gene-LOC107008474, gene-LOC114073919 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5986 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3479 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01570.v3.1 |