Basic Information
Locus ID:
Ag6G01922
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
WNK1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 137527182 | 137529712 | + | Ag6G01922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 62,497.31 Da | 37.15 | 74.40 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13983 | STKc_WNK | 19 | 279 | 4.8687E-160 | - |
| Pfam | PF00069 | Protein kinase domain | 24 | 279 | 3.0E-47 | IPR000719 |
| Pfam | PF12202 | Oxidative-stress-responsive kinase 1 C-terminal domain | 377 | 429 | 9.8E-6 | IPR024678 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 280 | 2.97E-61 | IPR011009 |
| Gene3D | G3DSA:3.10.20.90 | - | 374 | 442 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 5 | 103 | 9.0E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 105 | 285 | 7.5E-53 | - |
| SMART | SM00220 | serkin_6 | 21 | 279 | 8.7E-55 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 21 | 279 | 38.562511 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 146 | 158 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04910.1 | with no lysine (K) kinase 1. Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. | 0 |
| RefSeq | XP_017232677.1 | PREDICTED: probable serine/threonine-protein kinase WNK9 [Daucus carota subsp. sativus] | 0 |
| Q9CAV6 | Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana OX=3702 GN=WNK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161X489 | non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.695792 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.303728 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.007331 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.696429 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.312913 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.358634 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.330437 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.568254 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.143345 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.770135 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.464286 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.452629 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.031799 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.739302 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.767462 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.890709 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.320091 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.713935 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.28969 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.883608 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.916963 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.722184 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.344632 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.196094 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.838263 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.153773 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.77707 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.351131 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.594656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.652046 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.204608 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.032801 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.349312 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.02538 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.436678 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.976343 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.66258 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.98461 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.923418 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.938382 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.452172 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.47344 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.51908 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.361446 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.565235 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.809442 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.176341 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.447786 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.333169 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.772366 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg12561, jg27893, jg5735 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10071, gene_2576 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006051, Ah037591 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081870 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg16836, Sbi_jg5166, Sbi_jg61369, Sbi_jg6957 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg123, Seu_jg13118 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00003657, GOSA_00003658, GOSA_00008227 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl00127, Sgl00296, Sgl05352, Sgl24811, Sgl29959 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008852, gene:ENSEOMG00000017685 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0010210, CQ.Regalona.r1.4BG0010420 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30091690, pistato.v30236820 |
| Apiaceae | Apium graveolens | 6 | Ag1G01868, Ag5G02498, Ag6G01922, Ag6G01951, Ag8G01602 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G014450, contig69553323G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717647, gene-LOC103723763, gene-LOC120108451 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1608.V1.1, AsparagusV1_07.3719.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G26261, Ftri4G07256 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G04910.1, AT3G22420.2, AT5G28080.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004283m.g.v1.0, Thhalv10020195m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g20250.v2.2, Sp3g03720.v2.2, Sp3g20180.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g040210.2N, BniB01g058680.2N, BniB02g079430.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2349, Ceq09G1345 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2473, Cgl09G1435 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g11720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12071 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2292, evm.TU.LG11.1042 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021298, Pov_00025983 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb3G15925, Lb3G15926, Lb4G21744, Lb4G24285, Lb6G29641 ... |
| Poaceae | Echinochloa crus-galli | 6 | AH03.3399, AH03.433, BH03.3652, BH03.529, CH03.3845 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0558520, gene-QOZ80_7AG0573860 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0132510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040153 |
| Poaceae | Oryza coarctata | 3 | Oco13G010620, Oco14G003010, Oco14G011330 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g08750.1, LOC_Os07g38530.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G058000, gene-BS78_02G323000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303730, Pt_Chr0304508 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr19G003880, Chr24G000210, Chr24G010820, Chr27G013390 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G375300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG025210, gene_TRIDC2BG029650 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G195900.2, TraesCS2B02G223600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb107400_P001, Zm00001eb301720_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10542, nbis-gene-26789 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5399, Zma_g6104 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1742, evm.TU.LG08.535, evm.TU.LG11.1094 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04900 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.199, evm.TU.Scaffold_2_RagTag.1966 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-1476, nbisL1-mrna-3380, nbisL1-mrna-8034 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11631, nbisL1-mrna-49, nbisL1-mrna-6490 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13759, nbisL1-mrna-5258, nbisL1-mrna-6174 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.111, evm.TU.utg000012l.137 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00005737, Maker00010946, Maker00012903 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12926, nbisL1-mrna-6353, nbisL1-mrna-7821 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-16227, nbisL1-mrna-185, nbisL1-mrna-2124 |
| Salicaceae | Populus euphratica | 4 | populus_peu07378, populus_peu13541, populus_peu15870 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609213, gene-LOC132645250 |
| Solanaceae | Solanum chilense | 2 | SOLCI001721500, SOLCI006482400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107031245, gene-LOC107031313 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.32051_chr09_-, gene_12003, gene_7926 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G0149, TC05G2294, TC06G0850 |
| Zosteraceae | Zostera marina | 2 | Zosma04g10340.v3.1, Zosma06g23130.v3.1 |