halophFGD

Basic Information

Locus ID: Ag6G01913

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the peptidase A1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	136851392	136855760	-	Ag6G01913

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.29	62,269.77 Da	40.80	80.34	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05476	pepsin_A_like_plant	90	561	4.13361E-69	IPR034161
Pfam	PF14541	Xylanase inhibitor C-terminal	283	392	2.3E-18	IPR032799
Pfam	PF14541	Xylanase inhibitor C-terminal	411	557	4.1E-27	IPR032799
Pfam	PF14543	Xylanase inhibitor N-terminal	91	259	9.2E-52	IPR032861
SUPERFAMILY	SSF50630	Acid proteases	394	562	7.85E-33	IPR021109
SUPERFAMILY	SSF50630	Acid proteases	86	394	3.9E-78	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	396	564	7.4E-44	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	70	256	1.8E-50	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	257	395	1.2E-30	IPR021109
ProSiteProfiles	PS51767	Peptidase family A1 domain profile.	91	557	39.376686	IPR033121
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	443	454	-	IPR001969
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	316	327	-	IPR001969
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	106	117	-	IPR001969
PRINTS	PR00792	Pepsin (A1) aspartic protease family signature	97	117	5.8E-6	IPR001461
PRINTS	PR00792	Pepsin (A1) aspartic protease family signature	316	327	5.8E-6	IPR001461

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0004190 (aspartic-type endopeptidase activity)

KEGG Pathway

KO Term:

K01379 (cathepsin D [EC:3.4.23.5])

Pathway:

ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) map04210 (Apoptosis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G64830.1	Eukaryotic aspartyl protease family protein.
RefSeq	XP_017234455.1	PREDICTED: aspartic proteinase CDR1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6XBF8	Aspartic proteinase CDR1 OS=Arabidopsis thaliana OX=3702 GN=CDR1 PE=1 SV=1
TrEMBL	A0A166DXG4	Peptidase A1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006638 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	824.647278	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	356.789612	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	205.874878	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	132.724579	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	152.063599	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	54.674843	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	156.35997	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	59.854858	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.870237		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.034426	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.031399	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.06337	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	19	jg12642, jg12735, jg1685, jg22786, jg22906, jg23673, jg25370 ... jg25943, jg25944, jg29095, jg29100, jg29786, jg37531, jg38459, jg7746, jg7747, jg7749, jg7753, jg7759
Aizoaceae	Mesembryanthemum crystallinum	3	gene_17003, gene_1816, gene_25933
Amaranthaceae	Atriplex hortensis	6	Ah013525, Ah013526, Ah035318, Ah035319, Ah035320, Ah035712
Amaranthaceae	Beta vulgaris	7	BVRB_2g023750, BVRB_2g029270, BVRB_6g149220, BVRB_6g149230 ... BVRB_6g149240, BVRB_6g149250, BVRB_6g149260
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg21426, Sbi_jg21563, Sbi_jg21756, Sbi_jg22061 ... Sbi_jg22256, Sbi_jg22426, Sbi_jg39326, Sbi_jg39327, Sbi_jg42275, Sbi_jg44863, Sbi_jg54658
Amaranthaceae	Salicornia europaea	6	Seu_jg11167, Seu_jg11168, Seu_jg15988, Seu_jg16184 ... Seu_jg16308, Seu_jg27264
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00002376, GOSA_00002377, GOSA_00002380, GOSA_00002381 ... GOSA_00008609, GOSA_00013368, GOSA_00016453
Amaranthaceae	Suaeda glauca	12	Sgl35391, Sgl35393, Sgl35395, Sgl35397, Sgl40766, Sgl40768 ... Sgl40770, Sgl40772, Sgl62862, Sgl63005, Sgl67475, Sgl67632
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000000291, gene:ENSEOMG00000001569 ... gene:ENSEOMG00000001720, gene:ENSEOMG00000002383, gene:ENSEOMG00000003231, gene:ENSEOMG00000003694, gene:ENSEOMG00000012519, gene:ENSEOMG00000013841, gene:ENSEOMG00000013875, gene:ENSEOMG00000014179, gene:ENSEOMG00000016204, gene:ENSEOMG00000017532, gene:ENSEOMG00000020075, gene:ENSEOMG00000024873, gene:ENSEOMG00000026157, gene:ENSEOMG00000026312, gene:ENSEOMG00000026464, gene:ENSEOMG00000026603, gene:ENSEOMG00000027149, gene:ENSEOMG00000049381
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1BG0019830, CQ.Regalona.r1.2AG0017010 ... CQ.Regalona.r1.2AG0021580, CQ.Regalona.r1.2BG0018790, CQ.Regalona.r1.6AG0005780, CQ.Regalona.r1.6AG0005800, CQ.Regalona.r1.6AG0005810, CQ.Regalona.r1.6AG0005820, CQ.Regalona.r1.6AG0005850, CQ.Regalona.r1.6BG0006060, CQ.Regalona.r1.6BG0006070, CQ.Regalona.r1.6BG0006090, CQ.Regalona.r1.6BG0006100, CQ.Regalona.r1.6BG0006120, CQ.Regalona.r1.6BG0006130
Anacardiaceae	Pistacia vera	3	pistato.v30020990, pistato.v30136540, pistato.v30238610
Apiaceae	Apium graveolens	6	Ag6G01775, Ag6G01776, Ag6G01912, Ag6G01913, Ag6G01914 ... AgUnG00642
Arecaceae	Cocos nucifera	4	COCNU_04G009270, COCNU_07G015580, COCNU_07G015590 ... scaffold001489G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720458, gene-LOC120104501
Asparagaceae	Asparagus officinalis	2	AsparagusV1_09.321.V1.1, AsparagusV1_10.47.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G26410, Ftri12G22009, Ftri16G18238, Ftri16G28894
Brassicaceae	Arabidopsis thaliana	8	AT1G31450.1, AT1G64830.1, AT2G28010.1, AT2G28030.1 ... AT2G28040.1, AT2G28220.1, AT2G35615.1, AT5G33340.1
Brassicaceae	Eutrema salsugineum	11	Thhalv10002859m.g.v1.0, Thhalv10003479m.g.v1.0 ... Thhalv10009809m.g.v1.0, Thhalv10012077m.g.v1.0, Thhalv10017578m.g.v1.0, Thhalv10017686m.g.v1.0, Thhalv10017839m.g.v1.0, Thhalv10017843m.g.v1.0, Thhalv10017848m.g.v1.0, Thhalv10017850m.g.v1.0, Thhalv10017857m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g27250.v2.2, Sp4g11030.v2.2, Sp4g11310.v2.2 ... Sp4g17850.v2.2, Sp5g17010.v2.2, Sp5g18810.v2.2, Sp7g07600.v2.2, SpUn0582_0010.v2.2, SpUn0582_0020.v2.2
Brassicaceae	Brassica nigra	11	BniB01g008970.2N, BniB01g015490.2N, BniB01g015710.2N ... BniB01g054290.2N, BniB01g061300.2N, BniB04g047280.2N, BniB06g008340.2N, BniB07g018380.2N, BniB07g018390.2N, BniB08g022320.2N, BniB08g040150.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq01G0720, Ceq05G0091, Ceq05G0093, Ceq05G0094, Ceq05G0179 ... Ceq09G1946
Casuarinaceae	Casuarina glauca	5	Cgl01G0894, Cgl05G0084, Cgl05G0090, Cgl05G0189, Cgl09G2130
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno18g04860
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate09g03950, gene.Thate09g03960, gene.Thate09g03970
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1144
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG02.834, evm.TU.LG02.835, evm.TU.LG03.1904 ... evm.TU.LG03.1905, evm.TU.LG03.1906, evm.TU.LG03.1907
Plantaginaceae	Plantago ovata	8	Pov_00003700, Pov_00025862, Pov_00030812, Pov_00030828 ... Pov_00030835, Pov_00031185, Pov_00031186, Pov_00032459
Plumbaginaceae	Limonium bicolor	1	Lb1G01678
Poaceae	Echinochloa crus-galli	3	AH02.436, BH02.453, CH02.500
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0012000, gene-QOZ80_1BG0060580
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.3HG0234840.1.CDS1 ... HORVU.MOREX.r3.3HG0239700.1.CDS1, HORVU.MOREX.r3.3HG0239710.1.CDS1, HORVU.MOREX.r3.3HG0239720.1.CDS1, HORVU.MOREX.r3.3HG0239740.1.CDS1, HORVU.MOREX.r3.3HG0239750.1.CDS1, HORVU.MOREX.r3.3HG0239770.1.CDS1, HORVU.MOREX.r3.3HG0239790.1.CDS1, HORVU.MOREX.r3.3HG0239800.1.CDS1, HORVU.MOREX.r3.3HG0239860.1.CDS1, HORVU.MOREX.r3.7HG0648780.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_050233, gene-QYE76_050415, gene-QYE76_050419 ... gene-QYE76_050421, gene-QYE76_050423, gene-QYE76_050428, gene-QYE76_050453, gene-QYE76_054811
Poaceae	Oryza coarctata	2	Oco01G003290, Oco02G003310
Poaceae	Oryza sativa	2	LOC_Os01g08330.1, LOC_Os07g34250.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G041900
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0200034, Pt_Chr0200040, Pt_Chr0200196, Pt_Chr0200275 ... Pt_Chr0200279, Pt_Chr0200280
Poaceae	Sporobolus alterniflorus	7	Chr02G020160, Chr03G005590, Chr03G005600, Chr03G005610 ... Chr05G011020, Chr08G006080, Chr08G006110
Poaceae	Thinopyrum elongatum	10	Tel3E01G207200, Tel3E01G207300, Tel3E01G207500 ... Tel3E01G208200, Tel3E01G208300, Tel3E01G208400, Tel3E01G208800, Tel3E01G208900, Tel7E01G186300, Tel7E01G186500
Poaceae	Triticum dicoccoides	3	gene_TRIDC3AG015110, gene_TRIDC3BG019680 ... gene_TRIDC3BG019690
Poaceae	Triticum aestivum	31	TraesCS3A02G098400.1.cds1, TraesCS3A02G120400.1.cds1 ... TraesCS3A02G120500.1.cds1, TraesCS3A02G120600.1, TraesCS3A02G120700.1.cds1, TraesCS3A02G121000.1.cds1, TraesCS3A02G121100.1, TraesCS3A02G121200.1.cds1, TraesCS3B02G114000.1, TraesCS3B02G139800.1.cds1, TraesCS3B02G139900.1.cds1, TraesCS3B02G140000.1.cds1, TraesCS3B02G140100.1.cds1, TraesCS3B02G140200.1.cds1, TraesCS3B02G140500.1.cds1, TraesCS3B02G140600.1.cds1, TraesCS3D02G098800.1, TraesCS3D02G122400.1, TraesCS3D02G122500.1.cds1, TraesCS3D02G122600.1.cds1, TraesCS3D02G122700.1.cds1, TraesCS3D02G122800.1.cds1, TraesCS3D02G122900.1, TraesCS3D02G123000.1.cds1, TraesCS3D02G123300.1.cds1, TraesCS4A02G387500.1.cds1, TraesCS4A02G387600.1.cds1, TraesCS7A02G088300.1.cds1, TraesCS7A02G088400.1, TraesCS7B02G437500.1.cds1, TraesCS7D02G083600.1.cds1
Poaceae	Zea mays	1	Zm00001eb190090_P001
Poaceae	Zoysia japonica	2	nbis-gene-13200, nbis-gene-6796
Poaceae	Zoysia macrostachya	1	Zma_g7725
Portulacaceae	Portulaca oleracea	14	evm.TU.LG02.576, evm.TU.LG02.577, evm.TU.LG03.2164 ... evm.TU.LG09.2097, evm.TU.LG10.992, evm.TU.LG13.238, evm.TU.LG13.239, evm.TU.LG13.241, evm.TU.LG13.242, evm.TU.LG13.243, evm.TU.LG14.452, evm.TU.LG17.993, evm.TU.LG17.994, evm.TU.LG17.996
Posidoniaceae	Posidonia oceanica	7	gene.Posoc06g06270, gene.Posoc07g02170, gene.Posoc07g02190 ... gene.Posoc07g02210, gene.Posoc07g02230, gene.Posoc07g02310, gene.Posoc07g04050
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_1_RagTag.479, evm.TU.Scaffold_1_RagTag.480 ... evm.TU.Scaffold_1_RagTag.481, evm.TU.Scaffold_1_RagTag.495, evm.TU.Scaffold_1_RagTag.496, evm.TU.Scaffold_5_RagTag.45
Rhizophoraceae	Carallia pectinifolia	12	nbisL1-mrna-10439, nbisL1-mrna-10441, nbisL1-mrna-19524 ... nbisL1-mrna-3052, nbisL1-mrna-3119, nbisL1-mrna-7667, nbisL1-mrna-7668, nbisL1-mrna-7669, nbisL1-mrna-7670, nbisL1-mrna-7688, nbisL1-mrna-7689, nbisL1-mrna-7690
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-11316, nbisL1-mrna-16010, nbisL1-mrna-16011 ... nbisL1-mrna-16012, nbisL1-mrna-16026, nbisL1-mrna-9205, nbisL1-mrna-9206
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10714, nbisL1-mrna-10715, nbisL1-mrna-5509 ... nbisL1-mrna-5510, nbisL1-mrna-5525, nbisL1-mrna-5526
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000006l.10, add.evm.TU.utg000006l.8 ... add.evm.TU.utg000012l.106, add.evm.TU.utg000012l.107, add.evm.TU.utg000012l.114, add.evm.TU.utg000012l.115
Rhizophoraceae	Kandelia obovata	4	Maker00010882, Maker00013220, Maker00013564, Maker00013798
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-20121, nbisL1-mrna-20123, nbisL1-mrna-20125
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-625, nbisL1-mrna-639, nbisL1-mrna-6871 ... nbisL1-mrna-6872
Salicaceae	Populus euphratica	7	populus_peu08023, populus_peu08036, populus_peu27407 ... populus_peu31397, populus_peu33994, populus_peu34164, populus_peu38169
Solanaceae	Lycium barbarum	10	gene-LOC132599898, gene-LOC132599899, gene-LOC132612234 ... gene-LOC132612261, gene-LOC132612321, gene-LOC132612338, gene-LOC132612339, gene-LOC132612340, gene-LOC132612341, gene-LOC132638264
Solanaceae	Solanum chilense	9	SOLCI003061700, SOLCI003061800, SOLCI003061900 ... SOLCI005775600, SOLCI005775700, SOLCI005775800, SOLCI005775900, SOLCI005833200, SOLCI005833400
Solanaceae	Solanum pennellii	11	gene-LOC107024833, gene-LOC107026537, gene-LOC107027354 ... gene-LOC107028096, gene-LOC107028198, gene-LOC107028263, gene-LOC107028267, gene-LOC107028270, gene-LOC107028292, gene-LOC107028312, gene-LOC114075565
Tamaricaceae	Reaumuria soongarica	7	gene_10875, gene_13901, gene_13959, gene_13960, gene_13961 ... gene_13962, gene_3743
Tamaricaceae	Tamarix chinensis	2	TC02G2796, TC02G2798
Zosteraceae	Zostera marina	5	Zosma04g04960.v3.1, Zosma04g04970.v3.1, Zosma04g04980.v3.1 ... Zosma06g02050.v3.1, Zosma06g21920.v3.1