Basic Information
Locus ID:
Ag6G01860
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 129487137 | 129489313 | - | Ag6G01860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 72,035.55 Da | 46.81 | 87.85 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 322 | 618 | 4.48822E-87 | - |
| Pfam | PF19160 | SPARK | 27 | 195 | 1.8E-29 | IPR043891 |
| Pfam | PF00069 | Protein kinase domain | 320 | 539 | 1.3E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 294 | 617 | 1.24E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 402 | 622 | 2.3E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 283 | 401 | 9.9E-32 | - |
| SMART | SM00220 | serkin_6 | 316 | 616 | 1.1E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 316 | 631 | 34.477787 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 456 | 468 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 322 | 344 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11050.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017236283.1 | PREDICTED: probable receptor-like protein kinase At1g11050 [Daucus carota subsp. sativus] | 0 |
| O04086 | Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana OX=3702 GN=At1g11050 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162ATZ1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.145362 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.764238 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.823746 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.797052 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.026718 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.053834 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.902644 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.6188 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.420055 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.99195 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.807934 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.640786 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.317504 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.98775 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.479773 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.039365 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.326761 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.998726 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.072578 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.197344 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.698348 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.007417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.679165 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.777415 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.184748 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.891293 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.067418 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.506598 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.820413 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.02194 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.772764 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.733261 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.921983 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.217356 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.965672 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.861794 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.614463 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.571049 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.480576 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.727447 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.864618 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.5166 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.249308 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.885283 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.61527 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.135699 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.082174 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.616659 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.861931 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.649339 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23147, jg28393, jg30086 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17530, gene_1916 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031463 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g098310, BVRB_6g143620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12956, Sbi_jg4865, Sbi_jg52912, Sbi_jg7236 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12776, Seu_jg8946 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001485, GOSA_00010987 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl32162, Sgl37457, Sgl37460, Sgl51641, Sgl56940 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003137, gene:ENSEOMG00000003293 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0014120, CQ.Regalona.r1.5AG0000750 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30039030, pistato.v30039070, pistato.v30051010 ... |
| Apiaceae | Apium graveolens | 8 | Ag10G00485, Ag10G00535, Ag10G00536, Ag6G01860, Ag6G01861 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G020370, COCNU_01G020390, COCNU_01G020400 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702601, gene-LOC103702728, gene-LOC113462444 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2930.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G12685, Ftri16G10698, Ftri16G31916 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G11050.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007041m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g09740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g006020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1864, Ceq09G0172 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0205 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5252 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.843, evm.TU.LG06.844, evm.TU.LG08.747 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002005, Pov_00039962 |
| Poaceae | Echinochloa crus-galli | 1 | AH06.2396 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0042210, gene-QOZ80_5AG0372630 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0065070.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013167, gene-QYE76_056933, gene-QYE76_056967 |
| Poaceae | Oryza coarctata | 4 | Oco01G026650, Oco02G027660, Oco09G010040, Oco10G010130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66020.1, LOC_Os05g34950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G359000, gene-BS78_09G149500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505047, Pt_Chr0600078 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr05G030250, Chr0G023520, Chr0G032280, Chr18G009710 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G435500, Tel3E01G646300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG039480, gene_TRIDC1BG044930 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G264400.1.cds1, TraesCS1B02G275100.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb349080_P001, Zm00001eb366140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23918 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28268, Zma_g9137 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3500, evm.TU.LG08.1793, evm.TU.LG16.82 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1425, evm.TU.Scaffold_7_RagTag.1136 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18710, nbisL1-mrna-3707, nbisL1-mrna-9308 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-455, nbisL1-mrna-5560 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13123, nbisL1-mrna-18869 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.163, add.evm.TU.utg000009l.151 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19996, nbisL1-mrna-22439, nbisL1-mrna-22441 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-19196, nbisL1-mrna-19198, nbisL1-mrna-9805 |
| Salicaceae | Populus euphratica | 3 | populus_peu09683, populus_peu14773, populus_peu24837 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598690, gene-LOC132627151 |
| Solanaceae | Solanum chilense | 1 | SOLCI002907800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030431 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.17067_chr08_+, gene_15117 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1094 |
| Zosteraceae | Zostera marina | 1 | Zosma02g06860.v3.1 |