Basic Information
Locus ID:
Ag6G01857
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
mitochondrial
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 128924554 | 128931850 | + | Ag6G01857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 46,867.96 Da | 40.55 | 89.09 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01571 | Aminomethyltransferase folate-binding domain | 97 | 317 | 1.6E-32 | IPR006222 |
| SUPERFAMILY | SSF101790 | Aminomethyltransferase beta-barrel domain | 349 | 417 | 1.64E-5 | IPR029043 |
| SUPERFAMILY | SSF103025 | Folate-binding domain | 95 | 338 | 7.22E-55 | - |
| Gene3D | G3DSA:3.30.1360.120 | Probable tRNA modification gtpase trme; domain 1 | 87 | 417 | 3.7E-70 | IPR027266 |
| TIGRFAM | TIGR03317 | ygfZ_signature: folate-binding protein YgfZ | 288 | 351 | 1.9E-17 | IPR017703 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60990.1 | Glycine cleavage T-protein family. | 0 |
| RefSeq | XP_017236284.1 | PREDICTED: putative transferase At1g60990, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q681Y3 | Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g60990 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161X4H2 | GCV_T domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006702 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.23955 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.1089 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.845398 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.822397 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.563766 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.820505 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.900648 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.906087 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.228811 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.335894 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.001892 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.053516 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.266218 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.540504 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.521167 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.708744 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.277195 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.420078 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 27.991941 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 33.340084 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 39.65506 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.257988 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.047619 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.632332 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.251755 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.85099 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.247276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.905493 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.119713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.700714 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.968615 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.906699 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.768118 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.526106 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.041368 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.379583 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.855112 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.330171 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.744619 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.825884 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 42.920578 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 53.313339 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 29.743755 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.291237 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.753111 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 50.194393 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.223829 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 31.017368 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 36.315575 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.237244 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064260 |
| Apiaceae | Apium graveolens | 1 | Ag6G01857 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1775.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G24419 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G60990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023478m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03530.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g075200.2N, BniB06g024310.2N, BniB07g046940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0171 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0203 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0867s00003.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.743 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06246, Lb4G23835, Lb8G36509 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.763 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7348 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17671 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5772 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.485 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011484 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8319 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-873, nbisL1-mrna-874 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598691 |
| Solanaceae | Solanum chilense | 1 | SOLCI002907900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008309 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30123_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0744 |