halophFGD

Basic Information

Locus ID: Ag6G01820

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	124157285	124162572	+	Ag6G01820

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.31	79,022.30 Da	62.55	66.52	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	375	508	6.1E-34	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	293	586	5.68E-64	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	377	518	5.5E-42	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	286	376	3.9E-22	-
SMART	SM00220	serkin_6	295	508	2.6E-51	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	295	508	27.580393	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	301	324	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	33	52	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	76	183	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	676	695	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	672	695	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	134	183	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	266	288	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	266	297	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K20717 (mitogen-activated protein kinase kinase kinase YODA [EC:2.7.11.25])

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G63700.1	Protein kinase superfamily protein. Member of MEKK subfamily, a component of the stomatal development regulatory pathway. Mutations in this locus result in embryo lethality.
RefSeq	XP_017233538.1	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9CAD5	Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana OX=3702 GN=YDA PE=1 SV=1
TrEMBL	A0A166DZZ6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006734 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.793089	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.193723	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.676425	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.86346	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.4748	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.910414	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.398566	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.769859	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.154102	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.155354	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.037083	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.070269	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.054844	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.038214	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.066096		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.102392	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.03117	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.041899	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.701559	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.308701	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.274954	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10195, jg23479, jg33967, jg37097
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14734, gene_3227
Amaranthaceae	Atriplex hortensis	2	Ah004615, Ah018847
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg23874, Sbi_jg38411, Sbi_jg6517, Sbi_jg7702
Amaranthaceae	Salicornia europaea	2	Seu_jg12324, Seu_jg15401
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001176, GOSA_00006493
Amaranthaceae	Suaeda glauca	5	Sgl01948, Sgl07103, Sgl52012, Sgl52031, Sgl57315
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001759, gene:ENSEOMG00000004701 ... gene:ENSEOMG00000023245, gene:ENSEOMG00000031235, gene:ENSEOMG00000032175, gene:ENSEOMG00000044503
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0003190, CQ.Regalona.r1.3BG0003390 ... CQ.Regalona.r1.5AG0007280, CQ.Regalona.r1.5BG0007560
Anacardiaceae	Pistacia vera	2	pistato.v30135920, pistato.v30183020
Apiaceae	Apium graveolens	3	Ag2G02029, Ag6G00688, Ag6G01820
Arecaceae	Cocos nucifera	3	COCNU_07G011350, COCNU_09G007940, COCNU_10G008600
Arecaceae	Phoenix dactylifera	3	gene-LOC103705516, gene-LOC103717430, gene-LOC103717728
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.2098.V1.1, AsparagusV1_Unassigned.1207.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G24897, Ftri3G20806, Ftri4G13297
Brassicaceae	Arabidopsis thaliana	1	AT1G63700.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10010957m.g.v1.0, Thhalv10023253m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g00950.v2.2
Brassicaceae	Brassica nigra	1	BniB04g022260.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0311, Ceq03G0312, Ceq09G1458
Casuarinaceae	Casuarina glauca	3	Cgl03G0389, Cgl03G0391, Cgl09G1551
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g02690, gene.Cymno14g01140
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate08g01720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11786
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2753, evm.TU.LG10.1422
Plantaginaceae	Plantago ovata	4	Pov_00005226, Pov_00010372, Pov_00010373, Pov_00040987
Plumbaginaceae	Limonium bicolor	2	Lb1G03958, Lb1G04006
Poaceae	Echinochloa crus-galli	5	AH07.2925, AH09.1902, BH07.2759, CH07.2821, CH09.2211
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0140190, gene-QOZ80_2BG0195860 ... gene-QOZ80_4AG0307610
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0188270.1, HORVU.MOREX.r3.6HG0602230.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009508, gene-QYE76_071982
Poaceae	Oryza coarctata	4	Oco03G017590, Oco04G018350, Oco07G012940, Oco08G012530
Poaceae	Oryza sativa	2	LOC_Os02g44642.1, LOC_Os04g47240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G223400, gene-BS78_06G189100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0301676, Pt_Chr0301701
Poaceae	Sporobolus alterniflorus	6	Chr06G005570, Chr09G023980, Chr0G020000, Chr0G033750 ... Chr15G007180, Chr23G006690
Poaceae	Thinopyrum elongatum	2	Tel2E01G695400, Tel6E01G461100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG058830, gene_TRIDC2BG061830 ... gene_TRIDC6AG037840, gene_TRIDC6BG044800
Poaceae	Triticum aestivum	6	TraesCS2A02G407600.1, TraesCS2B02G425500.2 ... TraesCS2D02G404700.1, TraesCS6A02G245000.3, TraesCS6B02G279300.1, TraesCS6D02G227300.1
Poaceae	Zea mays	5	Zm00001eb074180_P001, Zm00001eb074190_P001 ... Zm00001eb074200_P001, Zm00001eb186910_P001, Zm00001eb249950_P001
Poaceae	Zoysia japonica	3	nbis-gene-22341, nbis-gene-52442, nbis-gene-5541
Poaceae	Zoysia macrostachya	2	Zma_g16832, Zma_g21783
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1421, evm.TU.LG04.3360, evm.TU.LG14.704 ... evm.TU.LG16.239
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g13770, gene.Posoc06g05900
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1413, evm.TU.Scaffold_4_RagTag.107 ... evm.TU.Scaffold_16_RagTag.166
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12702, nbisL1-mrna-22405, nbisL1-mrna-29234
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10292, nbisL1-mrna-5530, nbisL1-mrna-7253
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20331, nbisL1-mrna-2173, nbisL1-mrna-22423
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.66, evm.TU.utg000010l.388 ... evm.TU.utg000022l.392
Rhizophoraceae	Kandelia obovata	3	Maker00001298, Maker00008950, Maker00014267
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1091, nbisL1-mrna-2345, nbisL1-mrna-3532
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20574, nbisL1-mrna-6293, nbisL1-mrna-6694
Salicaceae	Populus euphratica	4	populus_peu03575, populus_peu29306, populus_peu30668 ... populus_peu34418
Solanaceae	Lycium barbarum	3	gene-LOC132631943, gene-LOC132634913, gene-LOC132639347
Solanaceae	Solanum chilense	3	SOLCI002360400, SOLCI002473300, SOLCI004626700
Solanaceae	Solanum pennellii	3	gene-LOC107014195, gene-LOC107023656, gene-LOC107028248
Tamaricaceae	Reaumuria soongarica	2	gene_14777, gene_5221
Tamaricaceae	Tamarix chinensis	2	TC01G4271, TC06G2363
Zosteraceae	Zostera marina	2	Zosma01g10970.v3.1, Zosma03g26710.v3.1