Basic Information
Locus ID:
Ag6G01806
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Domain present in ubiquitin-regulatory proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 118953752 | 118959599 | + | Ag6G01806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 65,337.83 Da | 63.98 | 72.15 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 518 | 589 | 4.71226E-19 | - |
| CDD | cd14351 | UBA_Ubx1_like | 6 | 42 | 1.60016E-13 | - |
| Pfam | PF14555 | UBA-like domain | 6 | 46 | 2.9E-9 | - |
| Pfam | PF00789 | UBX domain | 509 | 589 | 9.3E-16 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 473 | 583 | 9.04E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 510 | 590 | 4.2E-23 | - |
| SMART | SM00726 | uim | 206 | 225 | 29.0 | IPR003903 |
| SMART | SM00166 | ubx_3 | 506 | 590 | 0.0034 | IPR001012 |
| SMART | SM00726 | uim | 241 | 260 | 2.2 | IPR003903 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 509 | 587 | 17.072859 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 156 | - | - |
| Coils | Coil | Coil | 439 | 501 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11740.1 | Ubiquitin-like superfamily protein. Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein. | 0 |
| RefSeq | XP_017236678.1 | PREDICTED: plant UBX domain-containing protein 8-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JPR7 | Plant UBX domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUX8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166E0I0 | UBX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006758 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.798389 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.72504 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 29.984905 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.485542 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.369043 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 31.694864 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 28.184704 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 34.287655 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.629065 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.592905 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.460316 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.891319 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.62657 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.177162 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.190207 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.830381 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.904453 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.486618 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.950651 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.215563 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.760017 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.146225 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.231022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.500568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.357136 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.265284 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.150087 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.849051 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.455275 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.150984 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.457155 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.528111 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.013632 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.450062 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 32.267189 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.377838 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.395476 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.415344 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.213318 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.347535 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.372953 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 55.680443 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 52.845821 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.541351 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 40.481556 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 50.587791 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.030033 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.735727 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.483358 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.239006 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23426, jg23427, jg23428, jg37153 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003780 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23711, Sbi_jg7553 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12482 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001267 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51905, Sgl57197 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006466, gene:ENSEOMG00000023259 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0007770, CQ.Regalona.r1.5BG0008480 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30003810, pistato.v30143660 |
| Apiaceae | Apium graveolens | 2 | Ag6G01806, Ag7G00027 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G006420, COCNU_09G001490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715067, gene-LOC103723707 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.391.V1.1, AsparagusV1_08.392.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G04995, Ftri7G11343 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G00752.1, AT4G11740.1, AT4G23040.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028549m.g.v1.0, Thhalv10028647m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g00740.v2.2, Sp6g05690.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g057360.2N, BniB08g041620.2N, BniB08g049790.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0452, Ceq05G0620 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0556, Cgl05G0639 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g10550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0202s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g18160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.931, evm.TU.LG10.1346 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003120 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10767, Lb2G14094 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2672, AH08.2282, BH03.2815, BH08.2424, CH03.3017 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0528940, gene-QOZ80_6BG0482950 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0497830.1, HORVU.MOREX.r3.7HG0686940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006766, gene-QYE76_030506 |
| Poaceae | Oryza coarctata | 4 | Oco15G013990, Oco16G013180, Oco17G009860, Oco18G009880 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g43300.1, LOC_Os09g35710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G248600, gene-BS78_07G217100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403465, Pt_Chr0403483, Pt_Chr0701205 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr10G013710, Chr11G008640, Chr14G010750, Chr16G018670 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G501200, Tel7E01G473200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG046530, gene_TRIDC5BG050300 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G313200.1, TraesCS5B02G314100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb103170_P001, Zm00001eb198600_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-17590, nbis-gene-31755, nbis-gene-35350 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g23379, Zma_g24478, Zma_g31997, Zma_g32244 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3433, evm.TU.LG04.3434, evm.TU.LG16.153 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g11720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.230, evm.TU.Scaffold_5_RagTag.314 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10891, nbisL1-mrna-18150 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14973, nbisL1-mrna-20398 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10489, nbisL1-mrna-8480 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.545, evm.TU.utg000007l.233 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013735, Maker00018482 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16071 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10852, nbisL1-mrna-6994 |
| Salicaceae | Populus euphratica | 3 | populus_peu03514, populus_peu27786, populus_peu34345 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634960 |
| Solanaceae | Solanum chilense | 1 | SOLCI004644900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028743 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14796, gene_16114 |
| Tamaricaceae | Tamarix chinensis | 6 | TC01G4341, TC02G0168, TC04G2312, TC06G2444, TC09G0594 ... |
| Zosteraceae | Zostera marina | 1 | Zosma05g33400.v3.1 |