Basic Information
Locus ID:
Ag6G01788
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
MINDY deubiquitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 116196651 | 116205408 | + | Ag6G01788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 79,928.16 Da | 43.39 | 79.71 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04424 | MINDY deubiquitinase | 44 | 166 | 1.6E-37 | IPR033979 |
| ProSitePatterns | PS00659 | Glycosyl hydrolases family 5 signature. | 604 | 613 | - | IPR018087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 446 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11860.1 | Protein of unknown function (DUF544) . | 0 |
| RefSeq | XP_017236654.1 | PREDICTED: uncharacterized protein LOC108209946 [Daucus carota subsp. sativus] | 0 |
| Q2KI23 | Ubiquitin carboxyl-terminal hydrolase MINDY-2 OS=Bos taurus OX=9913 GN=MINDY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166FBT5 | MINDY_DUB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008431 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.542809 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.084696 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.773966 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.969774 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.317229 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.100831 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.631832 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.29614 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.039078 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.052002 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.175041 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 64.439301 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.50753 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.573725 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.346485 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.693349 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.003493 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.195823 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.175988 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.753511 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.233459 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.085093 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.162772 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.759427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.398411 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.628452 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.131412 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.973757 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.021659 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.82329 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.893479 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.759237 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.486137 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.579166 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.757788 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.599788 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.194695 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.205095 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.619156 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.930946 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.786995 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.293571 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.830152 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.289098 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.481727 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.662041 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.124975 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.808891 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.331154 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.70219 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23408, jg37177, jg37178, jg37179 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1883 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003727, Ah010093 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23666, Sbi_jg7515 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12522 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001292, GOSA_00001293 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51872, Sgl57168 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007911, gene:ENSEOMG00000022849 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0008480, CQ.Regalona.r1.5BG0008740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092260 |
| Apiaceae | Apium graveolens | 1 | Ag6G01788 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005170, scaffold015050G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698954, gene-LOC103710635 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2251.V1.1, AsparagusV1_Unassigned.943.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G19974, Ftri7G11475, FtriNA25103 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G11860.1, AT4G22960.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027519m.g.v1.0, Thhalv10028490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g05610.v2.2, Sp7g21050.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g014190.2N, BniB08g036960.2N, BniB08g049600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0482 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0592 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno12g04570, gene.Cymno16g04580, gene.Cymno16g04590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0994s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g10930, gene.Thate05g01440, gene.Thate07g00600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1321 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001122, Pov_00029022 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24186 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2959, BH06.2742, CH06.3084 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0550610, gene-QOZ80_6BG0504140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0725220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035315 |
| Poaceae | Oryza coarctata | 2 | Oco11G017070, Oco12G017260 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g49800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G275000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400921, Pt_Chr0400997 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G021940, Chr11G000580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G677700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG056550, gene_TRIDC7BG049100 |
| Poaceae | Triticum aestivum | 4 | TraesCS5D02G032000.4, TraesCS7A02G406200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb227790_P001, Zm00001eb272510_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40751, nbis-gene-9586 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31126, Zma_g33394 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3455, evm.TU.LG10.275, evm.TU.LG16.131 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18120, gene.Posoc09g03710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.253, evm.TU.Scaffold_14_RagTag.254 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18128, nbisL1-mrna-22483 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3429, nbisL1-mrna-4053 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20273, nbisL1-mrna-23077, nbisL1-mrna-8459 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.217, evm.TU.utg000022l.349 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014360, Maker00018662 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16086, nbisL1-mrna-3490 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10829, nbisL1-mrna-6634 |
| Salicaceae | Populus euphratica | 2 | populus_peu03483, populus_peu34323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634990 |
| Solanaceae | Solanum chilense | 1 | SOLCI007116200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028996 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15004 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G4556, TC02G0033 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00250.v3.1 |