halophFGD

Basic Information

Locus ID: Ag6G01769

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	112879459	112882212	+	Ag6G01769

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.50	67,774.26 Da	43.31	107.09	0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	27	65	1.2E-6	IPR013210
SUPERFAMILY	SSF52058	L domain-like	46	408	7.82E-54	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	500	567	2.6E-11	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	184	284	8.5E-24	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	24	183	2.6E-39	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	285	329	1.1E-9	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	465	570	2.2E-12	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	330	425	8.7E-17	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	499	615	10.53479	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G12460.2	-
RefSeq	XP_017231806.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGE4	Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana OX=3702 GN=At1g12460 PE=1 SV=1
TrEMBL	A0A166E1D3	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006791 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.108683	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.065147	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.039149	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.591754	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.457772	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.406931	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.077631	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.720313	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.142457	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.054005	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.111645	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.117247	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.546048	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.53633	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.854502	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.82697	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.699089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.804945	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.548533	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.674351	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.101792		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.343855		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.262922	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.264404	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.058224	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.039193	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.11219	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.72666	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.663007	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.76519	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg4870, jg7572
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1896
Amaranthaceae	Atriplex hortensis	1	Ah003635
Amaranthaceae	Beta vulgaris	1	BVRB_5g101670
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg4592, Sbi_jg7476
Amaranthaceae	Salicornia europaea	1	Seu_jg12558
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00001323
Amaranthaceae	Suaeda glauca	2	Sgl51836, Sgl57128
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000023062, gene:ENSEOMG00000024560
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0008880, CQ.Regalona.r1.5BG0009220
Anacardiaceae	Pistacia vera	1	pistato.v30143310
Apiaceae	Apium graveolens	2	Ag6G01769, Ag9G02415
Arecaceae	Cocos nucifera	2	COCNU_07G007440, COCNU_10G005670
Arecaceae	Phoenix dactylifera	3	gene-LOC103700120, gene-LOC103716891, gene-LOC120110832
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.2685.V1.1
Asteraceae	Flaveria trinervia	1	Ftri16G21892
Brassicaceae	Arabidopsis thaliana	2	AT1G12460.1, AT1G62950.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10023252m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g11060.v2.2, Sp2g01650.v2.2
Brassicaceae	Brassica nigra	1	BniB04g027250.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G0523
Casuarinaceae	Casuarina glauca	1	Cgl03G0632
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno18g04600
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g03740
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1288
Plantaginaceae	Plantago ovata	1	Pov_00029086
Plumbaginaceae	Limonium bicolor	2	Lb2G10182, Lb2G10184
Poaceae	Echinochloa crus-galli	1	AH01.5159
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0232050, gene-QOZ80_3BG0295890
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0329750.1, HORVU.MOREX.r3.4HG0334260.1 ... HORVU.MOREX.r3.4HG0410810.1
Poaceae	Lolium multiflorum	1	gene-QYE76_071207
Poaceae	Oryza coarctata	4	Oco05G001640, Oco06G001620, Oco19G008680, Oco20G008570
Poaceae	Oryza sativa	2	LOC_Os03g03570.2, LOC_Os10g38800.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G496800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0100541, Pt_Chr0100586
Poaceae	Sporobolus alterniflorus	3	Chr04G005610, Chr07G005960, Chr12G001000
Poaceae	Thinopyrum elongatum	1	Tel4E01G528400
Poaceae	Triticum dicoccoides	2	gene_TRIDC4BG054030, gene_TRIDC5AG069970
Poaceae	Triticum aestivum	3	TraesCS4B02G320600.1, TraesCS4D02G317100.1 ... TraesCS5A02G491400.1
Poaceae	Zea mays	2	Zm00001eb002030_P001, Zm00001eb403550_P001
Poaceae	Zoysia japonica	1	nbis-gene-3064
Poaceae	Zoysia macrostachya	1	Zma_g2175
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.3478, evm.TU.LG16.108
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g02960
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.278, evm.TU.Scaffold_16_RagTag.258
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18104, nbisL1-mrna-22498
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3929, nbisL1-mrna-6010
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20259, nbisL1-mrna-8440
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000007l.206, evm.TU.utg000022l.337
Rhizophoraceae	Kandelia obovata	2	Maker00014214, Maker00018551
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-23245, nbisL1-mrna-3478
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10808, nbisL1-mrna-6620
Salicaceae	Populus euphratica	2	populus_peu03461, populus_peu34301
Solanaceae	Lycium barbarum	1	gene-LOC132635020
Solanaceae	Solanum chilense	1	SOLCI006876800
Solanaceae	Solanum pennellii	1	gene-LOC107028420
Tamaricaceae	Reaumuria soongarica	1	gene_14989
Tamaricaceae	Tamarix chinensis	1	TC01G4112
Zosteraceae	Zostera marina	1	Zosma06g03310.v3.1