Basic Information
Locus ID:
Ag6G01760
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RF-1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 110232290 | 110236036 | - | Ag6G01760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.28 | 26,192.96 Da | 45.49 | 77.99 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00472 | RF-1 domain | 98 | 224 | 5.1E-18 | IPR000352 |
| SUPERFAMILY | SSF110916 | Peptidyl-tRNA hydrolase domain-like | 96 | 188 | 1.11E-23 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 94 | 231 | 3.0E-42 | - |
| ProSitePatterns | PS00745 | Prokaryotic-type class I peptide chain release factors signature. | 109 | 125 | - | IPR000352 |
| Coils | Coil | Coil | 66 | 93 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62850.2 | Class I peptide chain release factor. | 0 |
| RefSeq | XP_017232200.1 | PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Daucus carota subsp. sativus] | 0 |
| B5XAM2 | Large ribosomal subunit protein mL62 OS=Salmo salar OX=8030 GN=mrpl58 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162AU60 | RF_PROK_I domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.354759 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.377382 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.637335 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.155689 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.59713 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.543686 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.967867 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.746229 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.584066 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.803686 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.987108 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.573215 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.421444 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.82618 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.424065 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.082294 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 26.005455 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.565571 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 26.415367 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.193636 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.144918 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.883257 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.311285 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.616179 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.53846 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.692093 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.712551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.62686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.693729 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.145987 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.389105 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.323404 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.069475 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.619459 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.71459 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 25.94824 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 24.659473 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 24.93465 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.465511 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.219936 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 40.062092 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.409037 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.422796 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.106855 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.946194 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.911755 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.904486 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.590649 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.73023 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.846111 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23381, jg37217 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14830 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003558 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4640, Sbi_jg7432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12596 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001352 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51782, Sgl57090 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004600, gene:ENSEOMG00000021773 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009190, CQ.Regalona.r1.5BG0009550 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092280 |
| Apiaceae | Apium graveolens | 1 | Ag6G01760 |
| Arecaceae | Cocos nucifera | 2 | scaffold004347G000010, scaffold005979G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706573, gene-LOC103713401, gene-LOC120107072 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.119.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G34136 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G62850.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023661m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g01760.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g021690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0580 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0686 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0012s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g05800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1261 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10230, Lb3G16598 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4340, BH01.4637, CH01.4959 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0241040, gene-QOZ80_3BG0287080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0391760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069532 |
| Poaceae | Oryza coarctata | 2 | Oco05G008170, Oco06G008450 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g14510.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G417800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102050 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G029510, Chr12G010010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G389000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG011020, gene_TRIDC4BG039550 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G080100.1, TraesCS4B02G223900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb010680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.233, evm.TU.LG17.226 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.297 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18081 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3948 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8420 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.192 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018346 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10789 |
| Salicaceae | Populus euphratica | 2 | populus_peu03437, populus_peu34271 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609841, gene-LOC132635043 |
| Solanaceae | Solanum chilense | 2 | SOLCI000178200, SOLCI004053100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026777, gene-LOC107029095 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14106 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2869 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02940.v3.1 |