halophFGD

Basic Information

Locus ID: Ag6G01757

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	110133735	110137625	+	Ag6G01757

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.23	75,048.79 Da	38.38	93.67	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12087	TM_EGFR-like	302	340	0.00982441	-
Pfam	PF13855	Leucine rich repeat	122	177	1.4E-6	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	26	66	2.3E-9	IPR013210
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	415	676	4.0E-38	IPR001245
SUPERFAMILY	SSF52058	L domain-like	28	236	1.7E-44	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	395	677	6.93E-56	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	381	489	2.1E-25	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	139	261	3.6E-31	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	491	684	7.8E-41	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	28	138	9.2E-26	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	411	680	29.064463	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22730.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017236576.1	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 [Daucus carota subsp. sativus]
Swiss-Prot	Q93YN1	Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1
TrEMBL	A0A161X4S5	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006802 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.169409	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.225485	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.144996	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.769467	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.410133	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.46128	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.142177	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.6524	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.328604	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.311047	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.059085	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.350665	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.321852	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.724411	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.803602	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.027954	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	12.123312	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.317819	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.370496	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.855508	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.913997	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.602308	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.640537	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.710917	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.486979	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.382027	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.411079	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.516131	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.072933	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.82973		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.054179		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.051259		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.973611		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.56146		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.500792		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.16622		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.30623		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.020632		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.58399	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.864671	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.449765	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.29718	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.773506	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.389264	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.675547	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.484287	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.298337	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.652393	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.254068	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.309496	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14082, jg26826, jg37220
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16054, gene_1913, gene_23222
Amaranthaceae	Atriplex hortensis	3	Ah003555, Ah019062, Ah023193
Amaranthaceae	Beta vulgaris	2	BVRB_3g055680, BVRB_5g102020
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg15383, Sbi_jg15385, Sbi_jg4308, Sbi_jg4645, Sbi_jg7428 ... Sbi_jg49516, Sbi_jg56197
Amaranthaceae	Salicornia europaea	3	Seu_jg12602, Seu_jg26665, Seu_jg5729
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000283, GOSA_00001355, GOSA_00020278
Amaranthaceae	Suaeda glauca	6	Sgl02142, Sgl07301, Sgl11286, Sgl16679, Sgl51779, Sgl57087
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006943, gene:ENSEOMG00000013192 ... gene:ENSEOMG00000023541, gene:ENSEOMG00000023587, gene:ENSEOMG00000029362, gene:ENSEOMG00000033916, gene:ENSEOMG00000043172, gene:ENSEOMG00000043792, gene:ENSEOMG00000047311
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0006380, CQ.Regalona.r1.2BG0023340 ... CQ.Regalona.r1.3AG0001560, CQ.Regalona.r1.3BG0001610, CQ.Regalona.r1.5AG0009220, CQ.Regalona.r1.5BG0009590
Anacardiaceae	Pistacia vera	5	pistato.v30000880, pistato.v30000900, pistato.v30002850 ... pistato.v30092340, pistato.v30181370
Apiaceae	Apium graveolens	1	Ag6G01757
Arecaceae	Cocos nucifera	3	COCNU_09G002130, scaffold017314G000010 ... scaffold030987G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103708290, gene-LOC103710547, gene-LOC103717399 ... gene-LOC120107149
Asteraceae	Flaveria trinervia	4	Ftri13G14937, Ftri14G20637, Ftri17G08196, Ftri3G14405
Brassicaceae	Arabidopsis thaliana	3	AT2G45340.1, AT4G22730.1, AT5G51560.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001341m.g.v1.0, Thhalv10012874m.g.v1.0 ... Thhalv10024592m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g27380.v2.2, Sp6g13780.v2.2, Sp7g20740.v2.2
Brassicaceae	Brassica nigra	4	BniB01g001530.2N, BniB02g028950.2N, BniB05g014420.2N ... BniB06g003790.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0511, Ceq02G2013, Ceq03G0150
Casuarinaceae	Casuarina glauca	4	Cgl02G0532, Cgl02G2087, Cgl03G0168, Cgl03G0176
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno18g02910
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g24940, gene.Thate05g01490, gene.Thate08g09300
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11841
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2286, evm.TU.LG04.172, evm.TU.LG10.1258
Plantaginaceae	Plantago ovata	5	Pov_00004241, Pov_00013819, Pov_00018714, Pov_00032716 ... Pov_00040825
Plumbaginaceae	Limonium bicolor	4	Lb1G04471, Lb1G04472, Lb1G04473, Lb2G14056
Poaceae	Echinochloa crus-galli	9	AH02.2106, AH06.119, AH08.153, BH02.2172, BH06.235, BH08.105 ... CH02.2333, CH06.212, CH08.94
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0021790, gene-QOZ80_1BG0071740 ... gene-QOZ80_6AG0507630, gene-QOZ80_6BG0459710, gene-QOZ80_8AG0615610, gene-QOZ80_8BG0643090
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0267430.2, HORVU.MOREX.r3.7HG0646060.1 ... HORVU.MOREX.r3.7HG0704310.1
Poaceae	Lolium multiflorum	3	gene-QYE76_027687, gene-QYE76_033456, gene-QYE76_053427
Poaceae	Oryza coarctata	6	Oco01G013120, Oco02G013280, Oco11G001680, Oco12G001600 ... Oco15G000850, Oco16G000960
Poaceae	Oryza sativa	3	LOC_Os01g39600.1, LOC_Os06g04370.1, LOC_Os08g02440.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G172100, gene-BS78_07G020900 ... gene-BS78_10G026300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0401950, Pt_Chr0401982, Pt_Chr0402611, Pt_Chr0603100
Poaceae	Sporobolus alterniflorus	5	Chr05G016950, Chr11G023640, Chr14G001280, Chr20G012860 ... Chr21G000370
Poaceae	Thinopyrum elongatum	3	Tel3E01G361800, Tel7E01G154100, Tel7E01G543100
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG030980, gene_TRIDC3BG035550 ... gene_TRIDC4AG061740, gene_TRIDC7AG044160, gene_TRIDC7BG035470
Poaceae	Triticum aestivum	9	TraesCS3A02G208100.2, TraesCS3B02G236500.1 ... TraesCS3D02G210900.1, TraesCS4A02G371100.1, TraesCS7A02G073700.1, TraesCS7A02G316000.1, TraesCS7B02G217000.1, TraesCS7D02G068600.1, TraesCS7D02G313000.1
Poaceae	Zea mays	5	Zm00001eb160250_P001, Zm00001eb260980_P002 ... Zm00001eb357110_P001, Zm00001eb377970_P001, Zm00001eb400010_P001
Poaceae	Zoysia japonica	3	nbis-gene-21548, nbis-gene-41440, nbis-gene-53840
Poaceae	Zoysia macrostachya	3	Zma_g10402, Zma_g23530, Zma_g31301
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.2408, evm.TU.LG04.3495, evm.TU.LG11.1546 ... evm.TU.LG16.89, evm.TU.LG19.784, evm.TU.LG24.784
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g07110
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.280, evm.TU.Scaffold_4_RagTag.249 ... evm.TU.Scaffold_9_RagTag.343
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-22517, nbisL1-mrna-29102, nbisL1-mrna-31015
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14876, nbisL1-mrna-5206, nbisL1-mrna-6873
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20243, nbisL1-mrna-2046, nbisL1-mrna-7155
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.335, evm.TU.utg000008l.158 ... evm.TU.utg000022l.323
Rhizophoraceae	Kandelia obovata	3	Maker00000976, Maker00009449, Maker00014271
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2434, nbisL1-mrna-3464, nbisL1-mrna-6848
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12676, nbisL1-mrna-6167, nbisL1-mrna-6598
Salicaceae	Populus euphratica	6	populus_peu03433, populus_peu27853, populus_peu29162 ... populus_peu30522, populus_peu31786, populus_peu34269
Solanaceae	Lycium barbarum	3	gene-LOC132631756, gene-LOC132635045, gene-LOC132645713
Solanaceae	Solanum chilense	3	SOLCI001721400, SOLCI002989300, SOLCI007049300
Solanaceae	Solanum pennellii	3	gene-LOC107008196, gene-LOC107012539, gene-LOC107028855
Tamaricaceae	Reaumuria soongarica	3	STRG.24045_chr05_+, STRG.6287_chr04_-, gene_1504
Tamaricaceae	Tamarix chinensis	3	TC01G2872, TC03G2664, TC06G1901
Zosteraceae	Zostera marina	1	Zosma02g06300.v3.1