halophFGD

Basic Information

Locus ID: Ag6G01746

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	109498529	109500478	+	Ag6G01746

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.77	38,479.64 Da	51.90	72.35	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14634	zinc-RING finger domain	199	239	1.3E-7	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	199	241	6.89E-5	-
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	200	238	9.981268	IPR001841

Best hit

Source	Best Hit ID	Description	E-value

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.594123	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.394848	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.262963	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.703696	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.743174	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.631899	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.999539	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.342797	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.983678	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.704484	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.177374	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.704652	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.310169	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.962558	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.583329	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.091421	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.404974	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.68644	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.700689	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.47515	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.661363	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.694719	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.181847	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.167968	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.594907	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.11577	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.152856		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.835808		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.640292		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.885925		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.153327		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.01944		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.885915		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.053337		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.317997		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.617138	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.414394	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.955377	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.095457	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.098919	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.176861	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.136594	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.815932	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.261158	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.406998	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

No orthogroup found for Ag6G01746.