Basic Information
Locus ID:
Ag6G01715
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 103772303 | 103774241 | - | Ag6G01715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 62,949.74 Da | 34.55 | 92.36 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 256 | 278 | 1.4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 194 | 221 | 2.7E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 121 | 168 | 4.6E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 385 | 433 | 2.8E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 284 | 330 | 9.2E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 360 | 384 | 0.034 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 225 | 251 | 5.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 96 | 119 | 0.11 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 442 | 564 | 1.3E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 35 | 171 | 1.4E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 172 | 251 | 1.3E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 252 | 338 | 7.5E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 341 | 441 | 2.3E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 197 | 219 | 1.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 225 | 251 | 4.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 388 | 418 | 2.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 124 | 157 | 1.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 288 | 320 | 6.0E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | 10.106377 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 386 | 420 | 9.941957 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 285 | 319 | 10.358486 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 122 | 156 | 10.533867 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47460.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_017236794.1 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Daucus carota subsp. sativus] | 0 |
| Q9FGL1 | Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E103 PE=3 SV=1 | 0 | |
| TrEMBL | A0A166E2B4 | Pentatricopeptide repeat-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006834 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.187375 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.249672 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.801901 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.429781 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.197715 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.453427 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.460088 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.880585 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.58709 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.560127 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.107306 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.099054 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.758679 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.708276 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.556728 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.948264 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.40181 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.057078 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.095673 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.934321 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.13205 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.774878 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.336557 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.949896 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.881401 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.278355 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.553333 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.571531 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.196396 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.452925 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.576344 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.563911 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.881849 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.473785 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.6405 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.581905 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.386675 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.674738 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.861691 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.8772 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.79607 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.974652 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.797375 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.683823 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.303251 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.124953 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.111652 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.602229 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.323469 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.860641 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15510 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14888 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24165, Sbi_jg8008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12032 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010758 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52378, Sgl57669 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004423 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004580, CQ.Regalona.r1.5BG0004990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142500 |
| Apiaceae | Apium graveolens | 1 | Ag6G01715 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G30799 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G47460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000835m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064050.2N, BniB04g010200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0044 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0048 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1194 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004190 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.926, evm.TU.LG17.914 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.338 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12290 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.167 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014200 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18103 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635120 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026631 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14929 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3807 |