Basic Information
Locus ID:
Ag6G01712
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
atg2484-1,g2484-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 103589290 | 103602127 | + | Ag6G01712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 226,248.58 Da | 53.08 | 68.99 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05641 | Agenet domain | 1627 | 1692 | 7.4E-11 | IPR008395 |
| SMART | SM00743 | agenet_At_2 | 1622 | 1689 | 1.0 | IPR014002 |
| SMART | SM00743 | agenet_At_2 | 1714 | 1772 | 1.4E-9 | IPR014002 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1996 | 2024 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 937 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1996 | 2105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1799 | 1813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1778 | 1794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1944 | 1976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1220 | 1243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2072 | 2088 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1036 | 1074 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1931 | 1984 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2025 | 2071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1778 | 1813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1037 | 1074 | - | - |
| Coils | Coil | Coil | 1465 | 1485 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17330.1 | G2484-1 protein. gene of unknown function expressed in seedlings, flower buds and stems | 0 |
| RefSeq | XP_017234385.1 | PREDICTED: uncharacterized protein LOC108208366 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JP43 | Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XGB6 | Agenet domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006836 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.431234 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.123793 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.063507 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.558739 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.022934 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.825771 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.302094 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 27.546993 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 78.408112 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 68.183136 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 74.018654 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 92.633331 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 89.315468 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 69.424355 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.623308 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.184556 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.295149 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.790382 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.018892 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.669149 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.113562 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.201025 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.26425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.271709 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.014515 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.873438 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.778328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.261808 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.224813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.062218 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.007439 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.473181 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.739921 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.371457 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.916908 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.693651 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.135106 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.694537 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.80406 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.639614 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.539685 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.10099 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.021072 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 46.931057 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.362072 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.798462 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.909958 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.463627 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.930931 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.879787 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23346, jg37281 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1982 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004020 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24173, Sbi_jg8012 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12028 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010764 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52382, Sgl57676 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007783, gene:ENSEOMG00000022617 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004530, CQ.Regalona.r1.5BG0004950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142480 |
| Apiaceae | Apium graveolens | 3 | Ag6G00602, Ag6G01712, Ag8G00642 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005380, COCNU_10G003770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711651, gene-LOC103716542 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3319.V1.1, AsparagusV1_10.788.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G25793, Ftri14G05894, Ftri16G00636 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G17330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072700.2N, BniB05g019060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0054 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g03800, gene.Cymno18g03850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04750 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004065, Pov_00004184 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08381, Lb2G08382, Lb2G08400 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2920, BH01.3267, CH01.3497, CH09.628, CH09.629 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116460, gene-QOZ80_2BG0170190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0058290.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G010060, Oco20G009870 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G288100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503187 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G027900, Chr09G004840, Chr13G020000, Chr15G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G374200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG033390, gene_TRIDC1BG038740 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G221100.3, TraesCS1B02G234400.4 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023270_P004, Zm00001eb391270_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36325, nbis-gene-37989 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12904, Zma_g15674 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3240, evm.TU.LG10.935, evm.TU.LG16.358 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.363, evm.TU.Scaffold_16_RagTag.341 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17996, nbisL1-mrna-22591 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12293, nbisL1-mrna-12294 |
| Rhizophoraceae | Ceriops zippeliana | 5 | nbisL1-mrna-20188, nbisL1-mrna-20189, nbisL1-mrna-8356 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.152, evm.TU.utg000022l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014378, Maker00018688 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16152, nbisL1-mrna-3429 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10731, nbisL1-mrna-6533 |
| Salicaceae | Populus euphratica | 2 | populus_peu03006, populus_peu33890 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635126 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027921 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16277_chr06_-, STRG.23931_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3811, TC09G0347 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19210.v3.1 |