Basic Information
Locus ID:
Ag6G01650
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 94142760 | 94149805 | - | Ag6G01650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 53,128.94 Da | 47.39 | 86.15 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 213 | 376 | 2.77658E-25 | - |
| CDD | cd02679 | MIT_spastin | 50 | 128 | 7.37687E-26 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 246 | 376 | 1.1E-40 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 401 | 433 | 2.6E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 205 | 478 | 4.18E-60 | IPR027417 |
| Gene3D | G3DSA:1.20.58.80 | - | 42 | 132 | 9.6E-6 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 377 | 459 | 1.3E-110 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 205 | 475 | 1.3E-110 | IPR027417 |
| SMART | SM00745 | smart | 50 | 127 | 1.0E-15 | IPR007330 |
| SMART | SM00382 | AAA_5 | 242 | 378 | 1.9E-18 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 348 | 367 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 183 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45500.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_017231096.1 | PREDICTED: fidgetin-like protein 1 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q54KQ7 | Spastin OS=Dictyostelium discoideum OX=44689 GN=DDB_G0287165 PE=3 SV=1 | 0 | |
| TrEMBL | A0A162AUC2 | Spastin OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006880 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.271576 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.975117 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.497671 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.141758 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 26.001394 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.15696 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.251169 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.711758 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.49193 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.577147 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.672153 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.031496 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.451736 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.469242 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.356625 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.315598 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.728233 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.671823 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.473004 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.400965 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.405285 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.193474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.379547 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.891712 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.20607 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.280272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.910962 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.295711 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.05187 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.870648 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.206985 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.545005 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.544065 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.990545 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.223206 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.548917 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.08955 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.109876 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.688509 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.032839 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.57452 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.359839 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.352185 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.483801 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.244143 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.861352 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.460037 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 35.643951 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 39.404594 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.062366 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29273, jg29275 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1367 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023147 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4357, Sbi_jg49469 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5772 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000320 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11239, Sgl16632, Sgl16633 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013072, gene:ENSEOMG00000033096 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006030, CQ.Regalona.r1.2BG0023680 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30003230, pistato.v30010840 |
| Apiaceae | Apium graveolens | 1 | Ag6G01650 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G006230 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721384, gene-LOC120108104 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.447.V1.1, AsparagusV1_Unassigned.973.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G03877 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001419m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g062770.2N, BniB06g003980.2N, BniB07g006170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0470 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0500 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g01180, gene.Cymno15g01200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2407s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05620 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2788 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.212 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19720 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.496, BH06.186, CH06.176 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0507260, gene-QOZ80_6BG0459280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0644630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027628 |
| Poaceae | Oryza coarctata | 2 | Oco11G001420, Oco12G001330 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G022600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Ctg00140 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G023890, Chr14G001080, Chr21G000180 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G138900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG062560, gene_TRIDC7AG007060 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G422400.1, TraesCS7A02G065800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb269570_P002, Zm00001eb378370_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51157 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31280 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2400 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g02690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1378 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4075 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2624 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.409 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002150 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12247 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18123 |
| Salicaceae | Populus euphratica | 1 | populus_peu27824 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645617 |
| Solanaceae | Solanum chilense | 1 | SOLCI003037600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008393 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29243_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2690 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03220.v3.1 |