halophFGD

Basic Information

Locus ID: Ag6G01602

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	89733785	89734982	-	Ag6G01602

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.34	38,620.40 Da	40.52	88.60	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	58	332	1.3E-42	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	33	333	9.44E-67	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	130	340	1.2E-51	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	28	129	1.6E-19	-
SMART	SM00220	serkin_6	55	340	1.2E-28	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	55	342	36.2304	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	177	189	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G10390.1	Protein kinase superfamily protein.
RefSeq	XP_017234352.1	PREDICTED: probable receptor-like protein kinase At4g10390 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SV83	Probable receptor-like protein kinase At4g10390 OS=Arabidopsis thaliana OX=3702 GN=At4g10390 PE=2 SV=1
TrEMBL	A0A166E4M2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006923 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.139257	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.072259	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.285005	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.197704	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.225414	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.232252	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.181442	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.116203	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.078599	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.162199	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	44.699589	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	28.636839	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.936268	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.571759	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.426453	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.639965	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.504998	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.82839	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.516995	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.558868	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.241721	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.443369	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.661335	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.182345	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.574047	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.696491		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.289955		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.050925		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.044167		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.04972	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.054532	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.410719	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.401008	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.811172	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.100115	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.03917	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.452072	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.195264	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.06276	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.317259	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg22517, jg37420, jg5028
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15105
Amaranthaceae	Atriplex hortensis	1	Ah004457
Amaranthaceae	Beta vulgaris	1	BVRB_5g107980
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15656, Sbi_jg56467
Amaranthaceae	Salicornia europaea	1	Seu_jg13699
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00001749
Amaranthaceae	Suaeda glauca	2	Sgl52545, Sgl57822
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000007180, gene:ENSEOMG00000022729 ... gene:ENSEOMG00000024240
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0001080, CQ.Regalona.r1.5BG0001190
Anacardiaceae	Pistacia vera	1	pistato.v30132760
Apiaceae	Apium graveolens	2	Ag6G00180, Ag6G01602
Arecaceae	Cocos nucifera	5	COCNU_08G007490, COCNU_09G002580, COCNU_10G004640 ... COCNU_11G002490, scaffold017593G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103708477, gene-LOC103712205, gene-LOC103715817 ... gene-LOC103721800
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2229.V1.1, AsparagusV1_04.2231.V1.1 ... AsparagusV1_04.2235.V1.1
Asteraceae	Flaveria trinervia	1	Ftri1G18555
Brassicaceae	Arabidopsis thaliana	2	AT1G33260.1, AT4G10390.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008055m.g.v1.0, Thhalv10028779m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g28710.v2.2, Sp6g07040.v2.2
Brassicaceae	Brassica nigra	2	BniB04g050080.2N, BniB05g058540.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0699, Ceq09G1337
Casuarinaceae	Casuarina glauca	2	Cgl03G0788, Cgl09G1426
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g07740, gene.Cymno03g07380, gene.Cymno12g04500
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g25120, gene.Thate05g08180, gene.Thate07g03280
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1652
Plantaginaceae	Plantago ovata	2	Pov_00003097, Pov_00041788
Plumbaginaceae	Limonium bicolor	3	Lb2G11992, Lb2G12002, Lb2G14258
Poaceae	Echinochloa crus-galli	6	AH01.1593, AH07.2812, BH01.1791, BH07.2624, CH01.1881 ... CH07.2699
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0113770, gene-QOZ80_2AG0139190 ... gene-QOZ80_2BG0166950, gene-QOZ80_2BG0194840, gene-QOZ80_3AG0230880, gene-QOZ80_3BG0296970, gene-QOZ80_4AG0308930, gene-QOZ80_4BG0339950
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0049480.1, HORVU.MOREX.r3.6HG0599320.1 ... HORVU.MOREX.r3.2HG0185050.1.CDS1, HORVU.MOREX.r3.4HG0417010.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_012068, gene-QYE76_024040, gene-QYE76_045269 ... gene-QYE76_071538
Poaceae	Oryza coarctata	7	Oco04G017440, Oco05G000720, Oco06G000720, Oco07G011880 ... Oco08G011550, Oco19G008020, Oco20G007890
Poaceae	Oryza sativa	4	LOC_Os02g43290.1, LOC_Os03g02190.1, LOC_Os04g45730.1 ... LOC_Os10g37190.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G177000, gene-BS78_01G508700 ... gene-BS78_04G212800, gene-BS78_06G174400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101485, Pt_Chr0201622, Pt_Chr0207509, Pt_Chr0502861
Poaceae	Sporobolus alterniflorus	12	Chr06G006290, Chr06G029460, Chr09G002710, Chr09G024660 ... Chr12G000480, Chr13G006160, Chr13G022080, Chr15G007980, Chr15G020710, Chr23G007670, Chr25G006330, Chr26G012100
Poaceae	Thinopyrum elongatum	4	Tel1E01G317000, Tel2E01G667600, Tel4E01G645500 ... Tel6E01G454200
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG027030, gene_TRIDC1BG033900 ... gene_TRIDC2AG056060, gene_TRIDC2BG058950, gene_TRIDC4BG063900, gene_TRIDC5AG078570, gene_TRIDC6AG037070, gene_TRIDC6BG043840
Poaceae	Triticum aestivum	12	TraesCS1A02G177000.1, TraesCS1B02G203200.1 ... TraesCS1D02G175400.1, TraesCS2A02G389100.1.cds1, TraesCS2B02G407100.2, TraesCS2D02G386900.1.cds1, TraesCS4B02G396500.1.cds1, TraesCS5A02G558000.1.cds1, TraesCS6A02G240100.1, TraesCS6B02G284500.1, TraesCS6D02G222400.1, TraesCSU02G030100.1.cds1
Poaceae	Zea mays	6	Zm00001eb043610_P001, Zm00001eb075270_P001 ... Zm00001eb186190_P001, Zm00001eb248880_P001, Zm00001eb404050_P001, Zm00001eb427620_P001
Poaceae	Zoysia japonica	6	nbis-gene-22435, nbis-gene-3174, nbis-gene-34390 ... nbis-gene-5414, nbis-gene-54522, nbis-gene-9326
Poaceae	Zoysia macrostachya	7	Zma_g12758, Zma_g14005, Zma_g15516, Zma_g16769, Zma_g20149 ... Zma_g21710, Zma_g2255
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.2930, evm.TU.LG10.578, evm.TU.LG16.684 ... evm.TU.LG17.590
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g17580, gene.Posoc09g03480
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-22251
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000022l.270, add.evm.TU.utg000022l.271
Salicaceae	Populus euphratica	2	populus_peu00175, populus_peu17282
Solanaceae	Lycium barbarum	3	gene-LOC132618296, gene-LOC132636400, gene-LOC132638572
Solanaceae	Solanum chilense	1	SOLCI000984800
Solanaceae	Solanum pennellii	2	gene-LOC107006860, gene-LOC107024419
Tamaricaceae	Reaumuria soongarica	1	STRG.23614_chr05_-
Tamaricaceae	Tamarix chinensis	1	TC01G4640
Zosteraceae	Zostera marina	1	Zosma01g04630.v3.1