halophFGD

Basic Information

Locus ID: Ag6G01591

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	88947473	88955084	-	Ag6G01591

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.76	99,211.82 Da	54.40	85.91	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16655	RING-Ubox_WDSUB1_like	815	856	1.39659E-21	-
CDD	cd14066	STKc_IRAK	529	792	6.89322E-84	-
CDD	cd01989	STK_N	44	196	1.51741E-41	-
Pfam	PF00069	Protein kinase domain	528	780	1.8E-39	IPR000719
Pfam	PF04564	U-box domain	811	881	8.6E-20	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	801	881	3.18E-25	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	503	792	6.2E-66	IPR011009
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	809	881	6.4E-28	IPR013083
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	596	803	1.4E-48	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	501	595	1.3E-27	-
SMART	SM00504	Ubox_2	814	877	1.3E-24	IPR003613
SMART	SM00220	serkin_6	523	793	6.2E-31	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	523	795	33.629745	IPR000719
ProSiteProfiles	PS51698	U-box domain profile.	810	881	35.499561	IPR003613
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	529	550	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	641	653	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	287	315	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	287	322	-	-
Coils	Coil	Coil	439	494	-	-
Coils	Coil	Coil	348	372	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G45910.1	U-box domain-containing protein kinase family protein.
RefSeq	XP_017235712.1	PREDICTED: U-box domain-containing protein 33 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q8GUH1	U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2
TrEMBL	A0A161X591	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006932 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.461342	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.784808	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	17.061739	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	17.696741	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.493382	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.302105	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	17.823586	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	16.381197	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.712826	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.086124	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.039169	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	19.076975	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	18.036911	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.398062	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.962228	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.439158	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	12.562394	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.121796	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.628014	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.581912	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.412213	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.980635	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.257678	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.028268	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.480866	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	15.847003	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.578664	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	12.15539	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.531921	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.324154		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.950815		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.335567		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.105895		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.906502		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.415573		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	6.086633		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.648303		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.358228		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.917747	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.807581	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.100887	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.771595	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	13.165906	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	35.841839	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	27.197386	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	10.232369	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.807108	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.59552	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.730776	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.063323	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1927, jg2286, jg29359
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16140, gene_1698, gene_1699, gene_1700
Amaranthaceae	Atriplex hortensis	4	Ah022999, Ah023000, Ah023003, Ah026927
Amaranthaceae	Beta vulgaris	7	BVRB_1g004560, BVRB_1g004570, BVRB_1g004590, BVRB_1g004600 ... BVRB_1g004610, BVRB_1g004620, BVRB_3g055100
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg38402, Sbi_jg4507, Sbi_jg4511, Sbi_jg4512, Sbi_jg49407 ... Sbi_jg49409, Sbi_jg49410, Sbi_jg6509
Amaranthaceae	Salicornia europaea	4	Seu_jg15408, Seu_jg5923, Seu_jg5925, Seu_jg5926
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000444, GOSA_00000445, GOSA_00000446, GOSA_00000447 ... GOSA_00006500
Amaranthaceae	Suaeda glauca	14	Sgl01957, Sgl07113, Sgl11066, Sgl11067, Sgl11069, Sgl11070 ... Sgl11071, Sgl11072, Sgl16474, Sgl16475, Sgl16481, Sgl16483, Sgl16484, Sgl16485
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000004247, gene:ENSEOMG00000013828 ... gene:ENSEOMG00000015346, gene:ENSEOMG00000025320, gene:ENSEOMG00000031798, gene:ENSEOMG00000032904, gene:ENSEOMG00000034205, gene:ENSEOMG00000034655, gene:ENSEOMG00000035157, gene:ENSEOMG00000036136, gene:ENSEOMG00000036721, gene:ENSEOMG00000047518, gene:ENSEOMG00000048036, gene:ENSEOMG00000050091
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0002930, CQ.Regalona.r1.2BG0024870 ... CQ.Regalona.r1.2BG0024880, CQ.Regalona.r1.2BG0024890, CQ.Regalona.r1.3AG0003050, CQ.Regalona.r1.3BG0003310, CQ.Regalona.r1.4AG0016310, CQ.Regalona.r1.6AG0020690, CQ.Regalona.r1.6BG0021750
Anacardiaceae	Pistacia vera	3	pistato.v30004550, pistato.v30004570, pistato.v30182970
Apiaceae	Apium graveolens	4	Ag2G02024, Ag6G00182, Ag6G01591, AgUnG01431
Arecaceae	Cocos nucifera	3	COCNU_07G011370, COCNU_08G010440, COCNU_09G007890
Arecaceae	Phoenix dactylifera	4	gene-LOC103698606, gene-LOC103705579, gene-LOC103717427 ... gene-LOC120103911
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.2106.V1.1, AsparagusV1_Unassigned.220.V1.1 ... AsparagusV1_Unassigned.221.V1.1, AsparagusV1_Unassigned.222.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G00277, Ftri7G01165
Brassicaceae	Arabidopsis thaliana	5	AT2G45910.1, AT2G45920.1, AT3G49060.1, AT3G61390.2 ... AT3G61410.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001310m.g.v1.0, Thhalv10006399m.g.v1.0 ... Thhalv10006400m.g.v1.0, Thhalv10010130m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g00650.v2.2, Sp1g00660.v2.2, Sp4g27980.v2.2 ... Sp4g27990.v2.2, Sp5g01990.v2.2, Sp5g02000.v2.2, Sp5g02010.v2.2, Sp5g13010.v2.2
Brassicaceae	Brassica nigra	12	BniB01g001180.2N, BniB01g001190.2N, BniB03g061970.2N ... BniB06g004290.2N, BniB06g004300.2N, BniB06g009850.2N, BniB06g053220.2N, BniB06g062030.2N, BniB06g062040.2N, BniB08g062310.2N, BniB08g075520.2N, BniB08g075530.2N
Casuarinaceae	Casuarina equisetifolia	20	Ceq01G0562, Ceq01G0564, Ceq01G0565, Ceq01G0569, Ceq05G0386 ... Ceq05G0387, Ceq05G0388, Ceq05G0390, Ceq05G0393, Ceq05G0395, Ceq05G0399, Ceq05G0401, Ceq05G0403, Ceq05G0404, Ceq05G0407, Ceq05G1208, Ceq05G1209, Ceq05G1211, Ceq05G1213, Ceq09G1454
Casuarinaceae	Casuarina glauca	19	Cgl01G0644, Cgl01G0645, Cgl01G0646, Cgl01G0647, Cgl01G0650 ... Cgl04G0110, Cgl05G0088, Cgl05G0089, Cgl05G0401, Cgl05G0402, Cgl05G0403, Cgl05G0405, Cgl05G0406, Cgl05G0409, Cgl05G1219, Cgl05G1220, Cgl05G1221, Cgl05G1222, Cgl09G1547
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g00930, gene.Cymno02g09510, gene.Cymno03g06020 ... gene.Cymno06g13400, gene.Cymno10g02580, gene.Cymno10g02590, gene.Cymno10g02600, gene.Cymno14g01100
Hydrocharitaceae	Thalassia testudinum	9	gene.Thate01g06730, gene.Thate02g28560, gene.Thate03g11000 ... gene.Thate03g15190, gene.Thate07g05560, gene.Thate08g01700, gene.Thate08g01710, gene.Thate08g11100, gene.Thate08g22530
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2802, nbisL1-mrna-2804
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2746, evm.TU.LG04.861
Plantaginaceae	Plantago ovata	4	Pov_00016715, Pov_00031928, Pov_00031933, Pov_00040981
Plumbaginaceae	Limonium bicolor	13	Lb0G38372, Lb0G38373, Lb1G03520, Lb1G03521, Lb1G03523 ... Lb1G03524, Lb1G03963, Lb1G03964, Lb1G04003, Lb1G05483, Lb2G11070, Lb2G11073, Lb2G11079
Poaceae	Echinochloa crus-galli	22	AH01.3004, AH01.3006, AH03.1123, AH03.1124, AH07.2917 ... AH07.2921, BH01.3336, BH01.3337, BH01.3341, BH03.1287, BH03.1288, BH07.2740, BH07.2741, BH07.2742, BH07.2743, CH01.3583, CH01.3586, CH03.1387, CH03.1443, CH03.1447, CH07.2814, CH07.2815
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0115760, gene-QOZ80_2AG0115780 ... gene-QOZ80_2AG0140160, gene-QOZ80_2BG0169630, gene-QOZ80_2BG0169650, gene-QOZ80_2BG0195820, gene-QOZ80_2BG0195830, gene-QOZ80_4AG0307630, gene-QOZ80_4BG0338650, gene-QOZ80_6AG0525150, gene-QOZ80_6AG0525170
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0055700.1, HORVU.MOREX.r3.1HG0055720.1 ... HORVU.MOREX.r3.1HG0055740.1, HORVU.MOREX.r3.5HG0495240.1, HORVU.MOREX.r3.5HG0495250.1, HORVU.MOREX.r3.6HG0602140.1
Poaceae	Lolium multiflorum	14	gene-QYE76_012484, gene-QYE76_012486, gene-QYE76_012488 ... gene-QYE76_029937, gene-QYE76_029938, gene-QYE76_038239, gene-QYE76_038240, gene-QYE76_038241, gene-QYE76_038251, gene-QYE76_038252, gene-QYE76_049683, gene-QYE76_049685, gene-QYE76_049694, gene-QYE76_071986
Poaceae	Oryza coarctata	8	Oco03G017560, Oco04G018310, Oco17G012270, Oco19G009530 ... Oco19G009550, Oco19G009700, Oco20G009450, Oco20G009470
Poaceae	Oryza sativa	6	LOC_Os09g39620.1, LOC_Os09g39640.1, LOC_Os10g40060.1 ... LOC_Os10g40100.1, LOC_Os10g40120.1, LOC_Os10g40490.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G294000, gene-BS78_01G294200 ... gene-BS78_02G134200, gene-BS78_02G134600
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0205954, Pt_Chr0403833, Pt_Chr0403883, Pt_Chr0405242 ... Pt_Chr0503115, Pt_Chr0503117, Pt_Chr0503150, Pt_Chr0503153, Pt_Chr0503154, Pt_Ctg00317, Pt_Ctg00318
Poaceae	Sporobolus alterniflorus	13	Chr06G005580, Chr06G028270, Chr09G004400, Chr09G004420 ... Chr10G005450, Chr10G005460, Chr11G013750, Chr13G020510, Chr13G020530, Chr15G007210, Chr15G018730, Chr15G019520, Chr21G008490
Poaceae	Thinopyrum elongatum	10	Tel1E01G357300, Tel1E01G357600, Tel4E01G012800 ... Tel4E01G012900, Tel4E01G573700, Tel4E01G574000, Tel4E01G574100, Tel5E01G471100, Tel5E01G471200, Tel6E01G461500
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG031360, gene_TRIDC1AG031380 ... gene_TRIDC1AG031400, gene_TRIDC1BG036730, gene_TRIDC1BG036820, gene_TRIDC1BG036860, gene_TRIDC4AG047370, gene_TRIDC4BG001240, gene_TRIDC5AG044080, gene_TRIDC5BG048050, gene_TRIDC5BG048060, gene_TRIDC6AG037910, gene_TRIDC6AG050680, gene_TRIDC6BG003080, gene_TRIDC6BG044860, gene_TRIDC6BG059270
Poaceae	Triticum aestivum	23	TraesCS1A02G207800.1, TraesCS1A02G207900.1 ... TraesCS1A02G208100.1, TraesCS1B02G221500.1, TraesCS1B02G221900.1, TraesCS1B02G222200.1, TraesCS1D02G211100.1, TraesCS1D02G211200.1, TraesCS1D02G211400.1, TraesCS4B02G350300.1, TraesCS4D02G003800.1, TraesCS5A02G294600.1, TraesCS5A02G294700.1, TraesCS5B02G293900.1, TraesCS5B02G294000.1, TraesCS5D02G302000.1, TraesCS5D02G302100.1, TraesCS6A02G245500.1, TraesCS6A02G338300.1, TraesCS6B02G278900.1, TraesCS6B02G368900.1, TraesCS6D02G227900.1, TraesCS6D02G319000.1
Poaceae	Zea mays	3	Zm00001eb022810_P002, Zm00001eb022920_P001 ... Zm00001eb186860_P001
Poaceae	Zoysia japonica	6	nbis-gene-22343, nbis-gene-22344, nbis-gene-31811 ... nbis-gene-47009, nbis-gene-47010, nbis-gene-53375
Poaceae	Zoysia macrostachya	7	Zma_g15632, Zma_g15633, Zma_g16830, Zma_g20222, Zma_g29844 ... Zma_g31405, Zma_g32024
Portulacaceae	Portulaca oleracea	11	evm.TU.LG04.2255, evm.TU.LG04.2274, evm.TU.LG04.2275 ... evm.TU.LG06.33, evm.TU.LG06.34, evm.TU.LG11.1642, evm.TU.LG19.924, evm.TU.LG19.925, evm.TU.LG19.927, evm.TU.LG24.927, evm.TU.LG24.929
Posidoniaceae	Posidonia oceanica	11	gene.Posoc02g13810, gene.Posoc02g13850, gene.Posoc02g13880 ... gene.Posoc02g13900, gene.Posoc03g01950, gene.Posoc03g01960, gene.Posoc06g05730, gene.Posoc06g05760, gene.Posoc06g05770, gene.Posoc06g05780, gene.Posoc06g05800
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1408, evm.TU.Scaffold_9_RagTag.504
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12699, nbisL1-mrna-21632
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19077, nbisL1-mrna-1920, nbisL1-mrna-5533
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22421, nbisL1-mrna-7330
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.262, evm.TU.utg000010l.385
Rhizophoraceae	Kandelia obovata	2	Maker00008809, Maker00017690
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1088, nbisL1-mrna-1761
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19631, nbisL1-mrna-20577
Salicaceae	Populus euphratica	6	populus_peu27691, populus_peu27692, populus_peu27693 ... populus_peu30661, populus_peu31660, populus_peu31661
Solanaceae	Lycium barbarum	2	gene-LOC132631932, gene-LOC132645572
Solanaceae	Solanum chilense	2	SOLCI001350600, SOLCI004625900
Solanaceae	Solanum pennellii	2	gene-LOC107007977, gene-LOC107015310
Tamaricaceae	Reaumuria soongarica	6	MSTRG.13959_chr08_+, MSTRG.19974_chr11_+, gene_1424 ... MSTRG.19976_chr11_-, gene_15233, gene_4158
Tamaricaceae	Tamarix chinensis	6	TC03G2242, TC03G2251, TC03G2252, TC06G2369, TC09G2217 ... TC09G2218
Zosteraceae	Zostera marina	3	Zosma03g26770.v3.1, Zosma03g26780.v3.1, Zosma05g28470.v3.1